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Report for CCDS22130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22130.1 Public Mus musculus 8 Defb39 23 108 98 CCDS HistoryNCBI Gene:360214Re-query CCDS DB by CCDS ID:22130.1Re-query CCDS DB by GeneID:360214See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075504.2 ENSMUSP00000074947.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075504.2Link to Ensembl Protein Viewer:ENSMUSP00000074947.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075504Re-query CCDS DB by Protein ID:ENSMUSP00000074947
Original member Current member NCBI NM_183038.3 NP_898859.2 Accepted alive Link to Nucleotide Sequence:NM_183038.3Link to Protein Sequence:NP_898859.2Re-query CCDS DB by Nucleotide ID:NM_183038Re-query CCDS DB by Protein ID:NP_898859Link to BLAST:NP_898859.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898859.2 74 Q70KL3 74 98.6487% 0 1

Chromosomal Locations for CCDS 22130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 19052853 19053016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19064750 19064810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (225 nt):
ATGAAGATCTCCTACTTTCTGCTGCTGATCCTCTCTCTAGGCAGCTCCCAGATCAACCCAGTTTCTGGTG
ACGATTCAATACAATGTTTTCAAAAGAATAACACCTGTCACACCAACCAATGCCCATATTTTCAAGATGA
GATCGGCACGTGTTATGACAGAAGAGGCAAGTGTTGCCAAAAACGCCTTTTGCATATCAGAGTTCCAAGG
AAGAAGAAGGTGTAA

Translation (74 aa):
MKISYFLLLILSLGSSQINPVSGDDSIQCFQKNNTCHTNQCPYFQDEIGTCYDRRGKCCQKRLLHIRVPR
KKKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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