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Report for CCDS51795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51795.1 Public Mus musculus 6 Vmn1r20 23 108 98 CCDS HistoryNCBI Gene:434017Re-query CCDS DB by CCDS ID:51795.1Re-query CCDS DB by GeneID:434017See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227909.1 ENSMUSP00000153815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227909.1Link to Ensembl Protein Viewer:ENSMUSP00000153815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227909Re-query CCDS DB by Protein ID:ENSMUSP00000153815
Original member Current member EBI ENSMUST00000226808.1 ENSMUSP00000153909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226808.1Link to Ensembl Protein Viewer:ENSMUSP00000153909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226808Re-query CCDS DB by Protein ID:ENSMUSP00000153909
Original member Current member NCBI NM_001101533.1 NP_001095003.1 Accepted alive Link to Nucleotide Sequence:NM_001101533.1Link to Protein Sequence:NP_001095003.1Re-query CCDS DB by Nucleotide ID:NM_001101533Re-query CCDS DB by Protein ID:NP_001095003Link to BLAST:NP_001095003.1

Chromosomal Locations for CCDS 51795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57431691 57432602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTTCTCACTCAAGAATGTCCTTTATTTCCAAGCTGGACTTGGAGTCCTAGCAAATATGTCTCTTCTTT
GCTTCTATATTTTCATAATTGTAGGTCACAGACCTAAGCCCACAGACTTGATCTCCTGTCAACTGACTTT
CATTCACATAATGGTGTTCCTCACCGGAGGGGACCTGTTGCTTACAGACATATTTGAGTCACTGAATATT
AATAATGACTTCAAATGTAAGGCAACTTTTTACATAAGTAGGGTGATGAGATGCCTCTCTATCTGCACCA
GCTGCCTCCTGAGTGTGTTCCAGGCTGTCACAATCAGTCCCAGTACTTCTTGTTTGGCAAAATTTAAACA
GAAACTAAGAAAATACATGGTCTATGTTTTCTTATGTATTTGGTCTTTCAGCTTTTCCTACAGTAGTAGC
CGGATCTTCTATGTTCGTGGTTTTACTAATGTGAGTGAGACTAACCAGATGCAGATCACTAAATCCTGCT
TACTCTTCCGCATGAACTCCATCATCAGGGTATTCATTTTTACAGTGACAACCTCCAGAGATGTATTTCT
TGTAGGAATGATGCTAACCACAAGTACATACATGGTGATTATCTTATGTAGACATCAGAGGCAGTGCAAG
CACCTTCATAGCATCAAGCACCTGAGAGCATCCCCTGAGAAAAGAGCCACCCAGACTATCTTGCTGCTAG
TGATTTTCTTTGTGGTCATGTACTGGGTGGACTTCATCATCTCAACCATATCAGTTCTGTTGTGGAGGTA
TGACACAGTCATCCTGAGGGTTCAGAAGTTTTTGATGTATGCCTATCCCACAATTAGTCCTTTGGTACAA
ATCAGTTCTGATAACAGAATAATAATTATGGTGAAAAACATGTACTCAAAGCACCACCAGAGATTTTTTT
AA

Translation (303 aa):
MFSLKNVLYFQAGLGVLANMSLLCFYIFIIVGHRPKPTDLISCQLTFIHIMVFLTGGDLLLTDIFESLNI
NNDFKCKATFYISRVMRCLSICTSCLLSVFQAVTISPSTSCLAKFKQKLRKYMVYVFLCIWSFSFSYSSS
RIFYVRGFTNVSETNQMQITKSCLLFRMNSIIRVFIFTVTTSRDVFLVGMMLTTSTYMVIILCRHQRQCK
HLHSIKHLRASPEKRATQTILLLVIFFVVMYWVDFIISTISVLLWRYDTVILRVQKFLMYAYPTISPLVQ
ISSDNRIIIMVKNMYSKHHQRFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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