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Report for CCDS55151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55151.1 Public Homo sapiens 7 CCDC71L 24 110 108 CCDS HistoryNCBI Gene:168455Re-query CCDS DB by CCDS ID:55151.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55151.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523505.3 ENSP00000430897.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000523505.3Link to Ensembl Protein Viewer:ENSP00000430897.2Re-query CCDS DB by Nucleotide ID:ENST00000523505Re-query CCDS DB by Protein ID:ENSP00000430897
Original member Current member NCBI NM_175884.6 NP_787080.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175884.6Link to Protein Sequence:NP_787080.2Re-query CCDS DB by Nucleotide ID:NM_175884Re-query CCDS DB by Protein ID:NP_787080Link to BLAST:NP_787080.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787080.2 235 Q8N9Z2-1 235 100% 0 0

Chromosomal Locations for CCDS 55151.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 106660189 106660896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCGGCGCAGTATGAAGAGGCGGCGGCGCCGGCGCCCGGTCGCCCCGGCCACGGCCGCCCGGGGCGGCG
ACTTTAGGGCAGAAGACGGGGCTGGGTTGGAGGCGCGGGAGGAGAAGGTGGTGTACTCGCGGTCGCAACT
GTCGCTGGCTGACAGCACCAAGGCGCTGGGCGACGCCTTCAAGCTCTTCATGCCCCGCAGCACGGAGTTC
ATGAGCTCGGACGCGGAGCTCTGGAGCTTCCTCTGCAGCCTCAAGCACCAGTTCTCCCCGCACATCCTGC
GCAGCAAGGACGTCTACGGCTACTCCTCCTGCCGGGCCCTGGTACCCGACCCCCCGGGGCCCCCTACAGC
CCGCGGCCAGGCGCGCCGGCCGGTTCCGCGCGCAGCGGCCAGGAGGAGGCGCCGCGGAGCCCGGGCGGCC
GCTGCCCGCAGGAGGAAGCCCCGGCCGCCACCCCCACCGCCGCCGCCCCCCGAGGAGAGCTGCCCGGCCA
AGCCCGTGGCCCCCGGGCCCTGCTTCGGGGGCCGCACCTTGGAGGAGATCTGGAGGGCGGCCACCCCGAC
GCTGACCACCTTCCCCACCATCCGCGTCGGCAGCGACGTGTGGGGCGAGCGCAGCCTGGCGGCAGCGCGG
CGCAGGGCGCGCCAGGTCCTGCGAGTGAACCTGGAACCCATGGTGAGGCTCCGCCGCTTCCCGGTGCCCC
GGGCATGA

Translation (235 aa):
MRRSMKRRRRRRPVAPATAARGGDFRAEDGAGLEAREEKVVYSRSQLSLADSTKALGDAFKLFMPRSTEF
MSSDAELWSFLCSLKHQFSPHILRSKDVYGYSSCRALVPDPPGPPTARGQARRPVPRAAARRRRRGARAA
AARRRKPRPPPPPPPPPEESCPAKPVAPGPCFGGRTLEEIWRAATPTLTTFPTIRVGSDVWGERSLAAAR
RRARQVLRVNLEPMVRLRRFPVPRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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