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Report for CCDS25599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25599.1 Public Mus musculus 11 Cog1 23 108 98 CCDS HistoryNCBI Gene:16834Re-query CCDS DB by CCDS ID:25599.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018805.14 ENSMUSP00000018805.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018805.14Link to Ensembl Protein Viewer:ENSMUSP00000018805.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000018805Re-query CCDS DB by Protein ID:ENSMUSP00000018805
Original member Current member NCBI NM_013581.3 NP_038609.3 Accepted alive Link to Nucleotide Sequence:NM_013581.3Link to Protein Sequence:NP_038609.3Re-query CCDS DB by Nucleotide ID:NM_013581Re-query CCDS DB by Protein ID:NP_038609Link to BLAST:NP_038609.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038609.3 980 Q9Z160 980 100% 0 0

Chromosomal Locations for CCDS 25599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113649561 113649875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113651845 113652086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113652225 113652406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113652542 113652712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113653904 113654060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113654968 113655178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113655860 113656648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113657003 113657149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113657375 113657536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113658479 113658606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113659269 113659377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113660943 113661052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113661140 113661218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113662207 113662347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGGCGGCCGCGACCGCCTCCTCCGCGCTCAAGCGGCTGGATCTGCGCGATCCCAACGCGCTCTTCGAGA
CTCATGGAGCGGAGGAGATCCGCGGGCTGGAGCGCCAGGTCCGAGCCGAGATCGAACACAAGAAGGAGGA
GCTGCGGCAGATGGTGGGCGAGCGGTACCGCGACCTGATCGAGGCGGCGGACACCATCGGCCAGATGCGC
CGCTGCGCCGAGGGCCTGGTGGACGCCGTGCAGGCCACCGATCAATACTGCGCCCGCCTCCGCCAGGCCG
GCTCCGTGGCGCCCCGGGTCCCACGGGCCCCGCAGCCACAGCCGCCGTCCGAGAAGTTCTACAGCATGGC
CGCCCAGATTAAGCTGCTGCTGGAGATCCCGGAGAAGATCTGGAGCGCCATGGAAGCCTCGCAGCACCTC
CAGGCCACACAGCTCTACCTGCTCTGCTGCCACCTGCATAGCCTGCTGCAGCTGGACTCCTCTAACTCCA
GATACAGCCCCATCCTCTCGAGATTTCCAATCCTCATCCGCCAGGTGGCAGCAGCCAGCCACTTCCGGTC
AACTATTTTGCACGAAAGCAAGATGCTGCTCAAATGCCAGGCTGTGTCGGACCAGGCTGTGGCCGAAGCC
CTCTGCTCCATAATGCTCTTGGAGGAGAGCTCTCCGCGCCAAGCCCTCACAGACTTCCTGCTGGCCAGAA
AGGCGACTATTCAGACGCTCCTGAACCAGTCTCATCACGGTGCTGGCATCAAGGCCCAGATTTGCTCTTT
GGTGGAGCTGCTGGCTACCACTCTGAACCAGGCACATGCCCTTTTCTACACCCTACCAGAAGGCGTGCTG
CCCGACCCATCCCTGCCCTGTGGCTTGCTCTTTTCTACCCTGGAGACAGTCACAAGGCAGCATCCCACTG
GAAAGGGCATCGGTGCCCTCCAAGGGGAGATGAAGCTATGCAGCTGGTTCAGACACCTGCCCACCTCCAT
TATCGAGTTCCAGCCCACACTCCGAACTCTCGCACATCCCATCAGCCAGGAGTACCTGAAAGACACGCTG
CAGAAATGGATCGACATGTGCAATGAAGACATTAAAAATGGGATCGGCAATCTGCTTATGTACGTGAAGA
GCATGAAGGGTCTGGCAGGCATCAGAGACGCCATATGGGATTTGCTTAGCAACGAGTCTGCCAGCCACAG
CTGGGAGGTGGTGTGTCAGCGGCTTCTGGAGAAGCCGCTCTTGTTCTGGGAGGACCTGATGCAGCAGCTC
TTCCTGGATCGGTTACAGACACTGACCAGAGAAGGCTTTGAATCCATCTCCAACAGCTCCAAAGAGCTTC
TAGTCTCAGCTCTGCAGGAGCTGGAGACCAACAACTCCACATCGAACAAGCATGTCCACTTTGAGCAGAA
CATGTCTTTCTTCCTCTGGTCCGAGAGCCCCAACGACCTGCCTTCTGATGCTGCCTGGGTCAGCGTAGCA
AACCGGGCTCAGTTTGCCAGTAGTGGCCTCTCCATGAAAGCCCAAGCCATTAGCCCGTGTGTCCAGAACT
TCTGTTCTGCCCTGGATTCTAAGCTGAAGGTTAAACTGGACGACCTCCTGGCCTACCTTCCCTCCAGTGA
CACACCATTGCTCAAGGATACCACCCCCACGCACCAGCCTAAGAACTCTGCCTTTGATCGATACGCAGAT
GCTGGGACCGTGCAGGACATGCTGCGTACGCAGTCCGTGGCCTGCATCAAGTCCGTCGTGGGCTGCATCC
AGGCAGAGCTGTGCACCATTGAAGAAGTCACACGGGAACAAAAGGATGTCCTTCACAGCACCAAGCTGCA
CGCAGTCCTCTTCATGGCCAGACTCTGCCAGTCTCTGGGAGAGCTGTGCCCTCACCTAAAGCAGTGTGTT
GTGGGACAGTGCGGGGGTTCTGAGAAACCTGCCAGGGAGGCGAGGGCTCTGAAAAAGCAGGGGAAGGGGA
GAGCTCAGGATGTCCTCCCCGCGCAGGCCCAGTGGCAGGGAGTGAAGGAAGTCCTGCTCCAACAGAGCGT
CATGGCCTACCGGGTCTGGAGCACAGCACTTGTGAAATTTCTGATTTGTGGATTCACTCGATCACTGCTT
CTCAGGGATGCCGGCTCAGTCCTGGCCACTGCCACCAATTGGGATGAACTAGAAATTCAAGAGGAGACAG
AGTCTGGCAGCAGTGTCACGTCTAAGATCCGCCTCCCTACTCAGCCCTCCTGGTATGTACAGTCCTTCCT
GTTTAGCTTATGCCAGGAAGTTAATCGGGTTGGAGGCCATGCTTTGCCAAAGGTCACCCTACAGGAGATG
CTGAAGACCTGCATGGCCCAAGTCATAGCTGCCTATGAGCAACTCACAGAGGAAAACCAGATAAAGAAAG
AAGGGGCATTTCCAATGACCCAGAACCGAGCCCTGCAGCTCCTCTACGACCTACGCTACCTCACCATGGT
TCTGAGCAGCAAGGGGGAGGAGGTGAAGAGTGGCCGGAGCAAGGCAGACTCCAGAATGGAGAAGATGACC
GAGAGGCTGGAGGCCCTCATTGACCCTTTTGACCTGGATGTCTTCACACCGCATCTCAACAGCAACCTCA
ACCGCCTGGTGCAGCGGACTTCAGTTCTATTTGGCTTGGTTACAGGCACAGAGAATCAGTTTGCCTCCCG
GAGCAGCACTTTCAACTCCCAGGAGCCCCATAACATACTGCCGCTGGCCTCCAGTCAGATCAGGTTTGGA
CTCCTTCCACTGAGCATGACAAGCACAAGAAAGGCGAGGGCAACCAGTAGAAGCGTTGAAACCCAAGCCC
AGGTTGGCCCCCCGGCACTCTCCAGAGTAGGTGACCCGACGACGCATCCTGGCTCCTTATTCAGGCAGCT
TGCAAGCGAGGAAGACGACTCACCTGCACCTTCATTATTCAAGCTTGCCTGGCTCTCTAGTATGACCAAG
TAG

Translation (980 aa):
MAAATASSALKRLDLRDPNALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAADTIGQMR
RCAEGLVDAVQATDQYCARLRQAGSVAPRVPRAPQPQPPSEKFYSMAAQIKLLLEIPEKIWSAMEASQHL
QATQLYLLCCHLHSLLQLDSSNSRYSPILSRFPILIRQVAAASHFRSTILHESKMLLKCQAVSDQAVAEA
LCSIMLLEESSPRQALTDFLLARKATIQTLLNQSHHGAGIKAQICSLVELLATTLNQAHALFYTLPEGVL
PDPSLPCGLLFSTLETVTRQHPTGKGIGALQGEMKLCSWFRHLPTSIIEFQPTLRTLAHPISQEYLKDTL
QKWIDMCNEDIKNGIGNLLMYVKSMKGLAGIRDAIWDLLSNESASHSWEVVCQRLLEKPLLFWEDLMQQL
FLDRLQTLTREGFESISNSSKELLVSALQELETNNSTSNKHVHFEQNMSFFLWSESPNDLPSDAAWVSVA
NRAQFASSGLSMKAQAISPCVQNFCSALDSKLKVKLDDLLAYLPSSDTPLLKDTTPTHQPKNSAFDRYAD
AGTVQDMLRTQSVACIKSVVGCIQAELCTIEEVTREQKDVLHSTKLHAVLFMARLCQSLGELCPHLKQCV
VGQCGGSEKPAREARALKKQGKGRAQDVLPAQAQWQGVKEVLLQQSVMAYRVWSTALVKFLICGFTRSLL
LRDAGSVLATATNWDELEIQEETESGSSVTSKIRLPTQPSWYVQSFLFSLCQEVNRVGGHALPKVTLQEM
LKTCMAQVIAAYEQLTEENQIKKEGAFPMTQNRALQLLYDLRYLTMVLSSKGEEVKSGRSKADSRMEKMT
ERLEALIDPFDLDVFTPHLNSNLNRLVQRTSVLFGLVTGTENQFASRSSTFNSQEPHNILPLASSQIRFG
LLPLSMTSTRKARATSRSVETQAQVGPPALSRVGDPTTHPGSLFRQLASEEDDSPAPSLFKLAWLSSMTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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