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Report for CCDS90659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90659.1 Public Mus musculus 9 Lsmem2 23 108 98 CCDS HistoryNCBI Gene:434436Re-query CCDS DB by CCDS ID:90659.1Re-query CCDS DB by GeneID:434436See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238519.1 ENSMUSP00000158647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238519.1Link to Ensembl Protein Viewer:ENSMUSP00000158647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238519Re-query CCDS DB by Protein ID:ENSMUSP00000158647
Original member Current member NCBI NM_001370877.1 NP_001357806.1 Accepted alive Link to Nucleotide Sequence:NM_001370877.1Link to Protein Sequence:NP_001357806.1Re-query CCDS DB by Nucleotide ID:NM_001370877Re-query CCDS DB by Protein ID:NP_001357806Link to BLAST:NP_001357806.1

Chromosomal Locations for CCDS 90659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107593536 107593669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107593826 107594011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107594086 107594196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107596989 107597010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGCCTGAGGAGACCCTAGAAGACACCGTGTTGCCAATGCAGAACCAGAGGAACAGGGGAGCACTGGCTC
CTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAGTCCATCAGTGACCTACACAGCGGAGGCTCACT
ACGACCCTGTCTGGTGGAGGAGGCACAGGCATGGGAGGAGCTTCTGGGTGTCTTACCACCATCGCTGTGC
ACCCAAGCTGGTTGCAGCCCTGTGTGTGGCCGTGGGGGCTTCCTTCTGCTGCTGGTACTGCTGGTGTTCA
CCTGCCTGGCGCTGGCCACCGTGGCTGTCTATCTAAGTGTGCTGCAGAGCGAATCCCTGAGGGTGTTGGC
TCACACACTGCGCACACAAGAGGAGACTCTGCTCAAATTGCGTCTGGCTAGCCTCAGCCAGCTAAGAAGG
CTCAACTCCAGTGAGGCTCGGGCACCCAGCTGA

Translation (150 aa):
MPEETLEDTVLPMQNQRNRGALAPNHVQEVRLHRVESISDLHSGGSLRPCLVEEAQAWEELLGVLPPSLC
TQAGCSPVCGRGGFLLLLVLLVFTCLALATVAVYLSVLQSESLRVLAHTLRTQEETLLKLRLASLSQLRR
LNSSEARAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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