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Report for CCDS26386.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26386.2 Public Mus musculus 13 Dcdc2a 23 108 98 CCDS HistoryNCBI Gene:195208Re-query CCDS DB by CCDS ID:26386.2Re-query CCDS DB by GeneID:195208See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26386.1
The coding region has been updated to represent an alternate splice pattern, resulting in a longer C-terminus that is more supported by the available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26386.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069614.6 ENSMUSP00000063650.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069614.6Link to Ensembl Protein Viewer:ENSMUSP00000063650.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069614Re-query CCDS DB by Protein ID:ENSMUSP00000063650
Original member Current member NCBI NM_177577.3 NP_808245.2 Accepted alive Link to Nucleotide Sequence:NM_177577.3Link to Protein Sequence:NP_808245.2Re-query CCDS DB by Nucleotide ID:NM_177577Re-query CCDS DB by Protein ID:NP_808245Link to BLAST:NP_808245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808245.2 475 Q5DU00-1 475 99.5789% 0 2

Chromosomal Locations for CCDS 26386.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 25056271 25056563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25061235 25061289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25102333 25102409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25102521 25102652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25107591 25107737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25110067 25110121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25119247 25119406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25187676 25187776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25202165 25202467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25205414 25205518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGAACGGTCCCAGCTCCAGGTCCAGCCACCTGTCGCAGCCGGTGGTGAAGAGTGTGCTGGTGTACCGCA
ATGGGGACCCCTTTTTCGCCGGGCGGCGTGTCGTCATTCACGAGAAGAAGGTGTCCAGCTTCGATGTCTT
CCTCAAAGAAGTGACTGGCGGTGTGCAGGCGCCTTTTGGGGCGGTTAGGAACATCTACACCCCGAGGACG
GGCCACCGCATCCGAAAACTGGACCAGATAGAGAGCGGGGGCAACTATGTGGCTGGGGGCCCGGAAGCGT
TCAAGAAACTCAATTACTTGGACATAGGCGAAATCAAGAAAAGACCAATGGAAGCTGTGAATACCGAGGT
GAAACCTGTCATTCACAGCAGGATCAACGTGTCCGCCCGCTTCAGGAAGTCGCTGCACGAGCCCTGCACC
ATTTTCTTGATTGCAAATGGAGACCTCATAAGCCCGGCTTCTCGCCTCCTCATCCCTAAAAAAGCTTTAA
ATCAGTGGGATCATGTACTACAAATGGTCACAGAAAAGATAACTCTCCGGAGTGGGGCTGTCCACAGGCT
ATATACGTTAGAAGGAAAGCTGGTTGAGAGTGGAGCAGAACTGGAGAATGGGCAGTTCTATGTGGCCGTC
GGCAGAGATAAGTTTAAGAGACTACCGTACAGTGAGTTACTTTTTGACAAGTCAGCAATGAGAAGGCCTT
ACGGTCAGAAAGCGTCTTCACTACCTCCCATGGTTGGATCCAGGAAGTCTAAAGGGAGCGGAAATTATCG
GCAATCCAAGTCAACCATCGGGTCTAGTGATAACTCATCTCCTCAGCCTCTGAAAAGGAAAGGGAAGAAA
GACTCAAACTCAGAAAAACCCACGAAAGTGAAACAGAGTGTGAAGTCGAAGACTTCCCACCAAGCAATCC
CAGACAATGGTGAAGGCATTTTCAAAGCTGGAGCAGAGAGATCTGAAACAAGGGGGGCAGCAGAAGTTCA
AGAAGATGAAGACACCCAGGTTGAGGTTCCAGTGGACCAGAGGCCAGCAGAAATAGTTGATGAGGAAGAA
GATGGTGAGAAAACAAGCAAAGATGCCAACCAGAAGGAAGACTTTTCAGCCATGAATGGTGAGACTGAAG
ACAGAGGGGGGAGCAAAGCGGCTGGTACCTCTGAGCAGGAGGAGGGAATCCCAGACCACGGGGAGAAGAA
GGCAAGCCCCTCTCGGGTAAATGGTGGCACGGATGAAGAGAATGGGGAGGAACTGGACCAGGTTGCCGAG
GAGCTCCAATCAACAGAGGACGAGAAAGGAAAGGCTGAAGGAGACAACAGTGGGCAAGATGAGGCTGGTT
TGGATGCTCAAAGACCACCAAGACCAGAAGTGACAGTCACCAGCCCTCAAGAGAATGAAGAGAACGAAGC
AAACAAGGCCTCTTCTGCTGTGGCATAG

Translation (475 aa):
MNGPSSRSSHLSQPVVKSVLVYRNGDPFFAGRRVVIHEKKVSSFDVFLKEVTGGVQAPFGAVRNIYTPRT
GHRIRKLDQIESGGNYVAGGPEAFKKLNYLDIGEIKKRPMEAVNTEVKPVIHSRINVSARFRKSLHEPCT
IFLIANGDLISPASRLLIPKKALNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAV
GRDKFKRLPYSELLFDKSAMRRPYGQKASSLPPMVGSRKSKGSGNYRQSKSTIGSSDNSSPQPLKRKGKK
DSNSEKPTKVKQSVKSKTSHQAIPDNGEGIFKAGAERSETRGAAEVQEDEDTQVEVPVDQRPAEIVDEEE
DGEKTSKDANQKEDFSAMNGETEDRGGSKAAGTSEQEEGIPDHGEKKASPSRVNGGTDEENGEELDQVAE
ELQSTEDEKGKAEGDNSGQDEAGLDAQRPPRPEVTVTSPQENEENEANKASSAVA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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