NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5186.1 Public Homo sapiens 6 OLIG3 24 110 108 CCDS HistoryNCBI Gene:167826Re-query CCDS DB by CCDS ID:5186.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5186.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367734.4 ENSP00000356708.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367734.4Link to Ensembl Protein Viewer:ENSP00000356708.2Re-query CCDS DB by Nucleotide ID:ENST00000367734Re-query CCDS DB by Protein ID:ENSP00000356708
Original member Current member NCBI NM_175747.2 NP_786923.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175747.2Link to Protein Sequence:NP_786923.1Re-query CCDS DB by Nucleotide ID:NM_175747Re-query CCDS DB by Protein ID:NP_786923Link to BLAST:NP_786923.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_786923.1 272 Q7RTU3 272 100% 0 0

Chromosomal Locations for CCDS 5186.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 137493352 137494170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGAATTCTGATTCGAGCTCTGTCTCCAGCAGAGCTTCATCTCCGGACATGGATGAGATGTACCTGAGGG
ACCACCACCACCGCCACCACCACCACCAGGAGAGCCGTCTCAACTCGGTCTCGTCCACGCAGGGCGATAT
GATGCAGAAGATGCCCGGGGAAAGCCTCTCGCGGGCTGGCGCCAAGGCCGCGGGAGAGAGCAGCAAGTAC
AAAATCAAGAAGCAGCTGTCGGAGCAGGACCTACAGCAGTTGAGGCTGAAGATCAACGGACGCGAACGCA
AGCGGATGCACGACCTGAACCTAGCCATGGACGGGCTGCGCGAAGTCATGCCCTACGCGCATGGGCCGTC
GGTGCGCAAGCTCTCCAAGATCGCCACACTCCTGCTCGCCAGAAACTACATCCTCATGCTCACCAGCTCC
CTGGAGGAGATGAAGAGGCTGGTTGGCGAGATCTATGGGGGCCACCACTCGGCCTTTCACTGCGGGACCG
TGGGCCACTCGGCCGGCCACCCCGCGCACGCGGCCAACTCCGTGCACCCGGTGCACCCCATCTTGGGCGG
CGCGCTCTCATCTGGCAACGCCTCGTCACCGCTGTCCGCCGCCTCACTTCCCGCCATCGGCACCATCCGG
CCTCCCCACTCGCTACTCAAGGCGCCCTCCACGCCGCCCGCGCTGCAGCTGGGCAGCGGCTTCCAGCACT
GGGCTGGTCTGCCCTGCCCCTGCACCATCTGCCAGATGCCGCCGCCGCCGCACCTGTCCGCTCTCTCCAC
AGCCAACATGGCCCGGCTGTCGGCCGAGTCCAAGGACTTGCTCAAGTGA

Translation (272 aa):
MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAGAKAAGESSKY
KIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSS
LEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAASLPAIGTIR
PPHSLLKAPSTPPALQLGSGFQHWAGLPCPCTICQMPPPPHLSALSTANMARLSAESKDLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH