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Report for CCDS25272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25272.1 Public Mus musculus 11 Dlx3 23 108 98 CCDS HistoryNCBI Gene:13393Re-query CCDS DB by CCDS ID:25272.1Re-query CCDS DB by GeneID:13393See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092768.6 ENSMUSP00000090443.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092768.6Link to Ensembl Protein Viewer:ENSMUSP00000090443.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092768Re-query CCDS DB by Protein ID:ENSMUSP00000090443
Original member Current member NCBI NM_010055.4 NP_034185.1 Accepted alive Link to Nucleotide Sequence:NM_010055.4Link to Protein Sequence:NP_034185.1Re-query CCDS DB by Nucleotide ID:NM_010055Re-query CCDS DB by Protein ID:NP_034185Link to BLAST:NP_034185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034185.1 287 Q64205 287 100% 0 0

Chromosomal Locations for CCDS 25272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95120322 95120646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95121708 95121898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95123409 95123756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGAGCGGCTCCTTCGATCGCAAGCTCAGCAGCATCCTCACCGACATCTCCAGCTCGCTCAGCTGCCATG
CGGGCTCCAAGGACTCGCCCACCCTGCCCGAATCTACAGTCACTGACCTGGGCTATTACAGCGCTCCTCA
GCATGACTACTACTCGGGCCAGCCCTACGGCCAGACGGTGAACCCCTACACCTACCACCACCAGTTCAAT
CTCAATGGGCTCGCAGGCACCGGCGCTTACTCGCCCAAGTCGGAATATACCTACGGGGGATCCTATAGGC
AGTACGGAGCGTACCGGGAGCAGCCTTTGCCTGCCCAGGACCCAGTGTCGGTGAAAGAGGAGCCGGAAGC
CGAGGTTCGCATGGTGAACGGCAAGCCCAAAAAGGTCCGAAAGCCGCGAACGATCTACTCCAGCTATCAG
CTGGCTGCCCTGCAGCGCCGTTTCCAGAAAGCCCAGTATCTGGCCTTGCCTGAGCGCGCCGAGCTAGCTG
CACAGCTGGGCCTCACACAAACACAGGTGAAAATCTGGTTCCAGAACCGCCGCTCCAAGTTCAAAAAGCT
CTATAAGAATGGGGAGGTGCCGCTGGAACACAGCCCCAACAACAGTGACTCCATGGCCTGCAACTCACCG
CCGTCACCAGCACTCTGGGACACATCTTCCCATTCCACGCCAGCCCCTGCCCGCAATCCGCTGCCCCCAC
CGCTCCCATACAGTGCCTCCCCCAACTACCTGGACGACCCCACCAACTCCTGGTACCACACACAGAACCT
CAGTGGACCCCACTTACAGCAGCAGCCTCCTCAGCCGGCTACCCTGCACCATGCCTCCCCTGGGCCCCCG
CCTAACCCTGGGGCTGTGTACTGA

Translation (287 aa):
MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESTVTDLGYYSAPQHDYYSGQPYGQTVNPYTYHHQFN
LNGLAGTGAYSPKSEYTYGGSYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQ
LAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSP
PSPALWDTSSHSTPAPARNPLPPPLPYSASPNYLDDPTNSWYHTQNLSGPHLQQQPPQPATLHHASPGPP
PNPGAVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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