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Report for CCDS13146.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13146.2 Public Homo sapiens 20 PAX1 24 110 108 CCDS HistoryNCBI Gene:5075Re-query CCDS DB by CCDS ID:13146.2Re-query CCDS DB by GeneID:5075See the combined annotation on chromosome 20 in Sequence Viewer

Public Note for CCDS 13146.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. There are no transcripts representing the 5' exon of the update in human, but the 5' end can be inferred from cross-species conservation and homologous transcripts in mouse, including NM_008780.2 (CCDS16835), AK134066.1 and AB080656.1.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13146.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398485.6 ENSP00000381499.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398485.6Link to Ensembl Protein Viewer:ENSP00000381499.2Re-query CCDS DB by Nucleotide ID:ENST00000398485Re-query CCDS DB by Protein ID:ENSP00000381499
Original member Current member NCBI NM_006192.5 NP_006183.2 Accepted alive Link to Nucleotide Sequence:NM_006192.5Link to Protein Sequence:NP_006183.2Re-query CCDS DB by Nucleotide ID:NM_006192Re-query CCDS DB by Protein ID:NP_006183Link to BLAST:NP_006183.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006183.2 534 P15863-1 534 100% 0 0

Chromosomal Locations for CCDS 13146.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 21705713 21705998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 21706438 21707067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 21708558 21708700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 21709222 21709444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 21714481 21714803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGAAGTTCACCCTGGGCCTGGGGTCGCGGGCGTGGAGAGTGTCCTGGGAGGGGGCAGCAGCGGCGGCGG
CAGGCCCTGGAGCGGGCGGCAGCGCGCTCCGCTGCCGCGCACAGCGCGTCTCCAGCCCGCGGCTGGGCCG
CCGCGGCTCTCGGCTCTCGGGCGCCCTCCCTCTATGCCTCTCACGCGGCGGCGGCGGCGCCCAAGCTCTC
CCGGACTGCGCCGGGCCCAGCCCCGGCCACCCCGGCCACCCCGGCGCCAGGCAGCTGGCCGGCCCGCTCG
CTATGGAGCAGACGTATGGCGAGGTGAACCAGCTGGGCGGTGTGTTCGTCAACGGCCGCCCCCTGCCCAA
CGCCATCCGCTTGCGCATTGTGGAGCTGGCGCAGCTGGGCATCCGACCCTGTGACATCAGTCGGCAGCTC
CGCGTATCCCACGGCTGCGTGAGCAAGATCCTGGCGCGCTACAACGAGACCGGCTCCATTCTGCCCGGGG
CCATCGGGGGGAGCAAGCCCCGCGTCACCACTCCCAACGTGGTCAAGCACATCCGGGACTACAAGCAAGG
AGACCCTGGCATCTTTGCCTGGGAGATCCGCGACCGGCTGCTGGCCGACGGCGTCTGTGACAAGTACAAT
GTGCCTTCGGTGAGCTCCATCAGCCGCATCCTGCGCAACAAGATCGGCAGCCTGGCGCAGCCCGGACCGT
ACGAGGCAAGTAAGCAGCCGCCGTCGCAGCCTACGCTGCCCTACAACCACATCTACCAGTACCCCTACCC
CAGTCCCGTGTCGCCCACGGGCGCCAAGATGGGCAGCCACCCCGGGGTCCCGGGCACGGCGGGCCACGTC
AGCATCCCGCGCTCATGGCCCTCGGCACACTCGGTCAGCAACATCCTGGGCATCCGGACGTTTATGGAGC
AAACAGGGGCCCTGGCTGGGAGCGAAGGCACCGCTTACTCTCCCAAGATGGAAGACTGGGCCGGCGTGAA
CCGCACGGCCTTCCCCGCCACCCCCGCAGTGAATGGGCTAGAGAAACCTGCCTTAGAGGCAGACATTAAA
TACACTCAGTCGGCCTCCACCCTCTCTGCCGTGGGCGGCTTTCTCCCCGCCTGCGCCTACCCGGCCTCCA
ACCAGCACGGCGTGTACAGCGCCCCGGGCGGCGGCTACCTCGCCCCGGGCCCGCCGTGGCCGCCTGCGCA
AGGTCCTCCTCTGGCGCCCCCCGGGGCCGGCGTAGCTGTGCATGGCGGGGAACTCGCGGCAGCAATGACC
TTCAAGCATCCCAGCCGAGAAGGAAGCCTCCCAGCTCCGGCAGCAAGGCCCCGGACGCCCTCAGTAGCTT
ACACGGACTGCCCATCCCGGCCTCGACCTCCTAGGGGCAGCTCTCCCCGGACCCGAGCCCGGAGGGAACG
GCAGGCGGACCCGGGCGCACAGGTCTGCGCGGCGGCCCCGGCAATCGGCACGGGCAGGATCGGAGGACTC
GCGGAGGAGGAAGCCAGTGCCGGCCCGCGGGGTGCACGCCCAGCCAGCCCCCAGGCCCAGCCCTGCCTCT
GGCCGGACCCACCACACTTCCTTTATTGGTCTGGGTTTTTAGGCTTCTCTGAACTTGGGTTTTAG

Translation (534 aa):
MKFTLGLGSRAWRVSWEGAAAAAAGPGAGGSALRCRAQRVSSPRLGRRGSRLSGALPLCLSRGGGGAQAL
PDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQL
RVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYN
VPSVSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHV
SIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGTAYSPKMEDWAGVNRTAFPATPAVNGLEKPALEADIK
YTQSASTLSAVGGFLPACAYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMT
FKHPSREGSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRARRERQADPGAQVCAAAPAIGTGRIGGL
AEEEASAGPRGARPASPQAQPCLWPDPPHFLYWSGFLGFSELGF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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