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Report for CCDS47573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47573.1 Public Homo sapiens 7 MATCAP2 24 110 108 CCDS HistoryNCBI Gene:23366Re-query CCDS DB by CCDS ID:47573.1Re-query CCDS DB by GeneID:23366See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317020.10 ENSP00000319251.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317020.10Link to Ensembl Protein Viewer:ENSP00000319251.6Re-query CCDS DB by Nucleotide ID:ENST00000317020Re-query CCDS DB by Protein ID:ENSP00000319251
Original member Current member NCBI NM_015314.3 NP_056129.2 Accepted alive Link to Nucleotide Sequence:NM_015314.3Link to Protein Sequence:NP_056129.2Re-query CCDS DB by Nucleotide ID:NM_015314Re-query CCDS DB by Protein ID:NP_056129Link to BLAST:NP_056129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056129.2 469 Q8NCT3-3 469 100% 0 0

Chromosomal Locations for CCDS 47573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 36326760 36326918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36330982 36331079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36333856 36334161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36335046 36335178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36356902 36357590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36366916 36366940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGCTGGAGTCCATTCGCGTGACGGAAAAGCTTCACTGGCCTGAGCAAGAACTTGCTAAGAAGTCTATTC
TAAATGCAGAAGATTCATTGATCATTGACAACAAAAGAAGCATTTCACATTTGTCCTCGGGAGTGCTAAA
AGACATTTTCACAACTGGAACCAGTAGTTACAATGTCCTACTACAGAGCAAGGAGGAAAAAAAGTATCAT
TCACAAAAACAGTCTTCCTCCACCTACTCCAAAAGATGTAGAAAACCCAGCAAATCTCCTAACACTTCTC
GTAGCAAAGATCCTCGCAGGATGAAAGCCCTGGTGCCTGTGACAAGCAGTGGTACTTGGTACTGCCTGGA
GAGGCGGCCTGCTGTTTTTGTCACTAGTTCAGTGTCAAGTCCTGTAAAGTTTACACATGATATCTCTGTT
ACAGGGAATGGCATAGTACTGCCACCTAAACCCAAAAGCAAGGTCAAGTGGTGCCATTTCTCCACTCTTC
CAAAGCCAAAGCCTCAGCTGTCTAGAAGCTTTGAAAAGGGAGATGACTTTTCTGGGAAGAAATTTTGTAT
ATTGACTGCTATAAAACCCACCAACTTAGAGAAAGAAAAACTGAGATTCTTCAAATCTGACTATACCTAC
AATCCTCAGTTTGAGTATGCCAATCCTGCTCTGCCAAGCGTATTAGCTAAGCATAGCCACGCATCTGACC
GATTTCTTAAGCAGATTGTAGTTCATCTCACTGAGGACCTGCTTTCCCGAGCGTCAATGACAGTAGTAAA
TGGATGTCCGACTCTGACTATCAATGTGTCCACTGCACGTGAGCATTGGCTGGAGGGAATGCTGAGGCAT
GAAATAGGTACACATTATTTTCGAGGTATTAACAACCTCCAGCAGCCATGGAACAGTTGGACTGGACGTA
AAAAACATGAGCTAAAGCCAAATAATCCCACAGAGGAAGGACTAGCAAGCATTCACAGTGTTCTGTTTAG
AAAAGACCCTTTTTTATGGAGGGCTGCCCTCCTCTACTACACTGTTTATCAAGCCAGCCAAATGTCTTTT
TGTGAACTCTTTAAAGATATTGGCAGGTTTGTCAAGGACCCCAATACAAGATGGGATTATTGTGTACGGG
CCAAGAGGGGATGGACTGATACTTCCCAACCAGGGTGTTTTAGTAAAGACCAGGTATACTTGGATGGAAT
TCTTCAAATCCTCCGATACAGAGATACCATAGACTTCCATCTGCTGACTGCTCTCGGGAAGGTTTCTTAT
GAAGATGTGGATCGCTTAAAAGGATTGGCAGTTACCGAAAACATGAGGGTCCCTCATTTCCTGCAGGACC
ATGGCCGATATATGGAACACTTAGAGAAGATCATGGAAGTGAATGAACTGACTGACAGGGAACTGAAAGA
TCTTATATAG

Translation (469 aa):
MLESIRVTEKLHWPEQELAKKSILNAEDSLIIDNKRSISHLSSGVLKDIFTTGTSSYNVLLQSKEEKKYH
SQKQSSSTYSKRCRKPSKSPNTSRSKDPRRMKALVPVTSSGTWYCLERRPAVFVTSSVSSPVKFTHDISV
TGNGIVLPPKPKSKVKWCHFSTLPKPKPQLSRSFEKGDDFSGKKFCILTAIKPTNLEKEKLRFFKSDYTY
NPQFEYANPALPSVLAKHSHASDRFLKQIVVHLTEDLLSRASMTVVNGCPTLTINVSTAREHWLEGMLRH
EIGTHYFRGINNLQQPWNSWTGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSF
CELFKDIGRFVKDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRYRDTIDFHLLTALGKVSY
EDVDRLKGLAVTENMRVPHFLQDHGRYMEHLEKIMEVNELTDRELKDLI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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