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Report for CCDS7301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7301.1 Public Homo sapiens 10 LRRC20 24 110 108 CCDS HistoryNCBI Gene:55222Re-query CCDS DB by CCDS ID:7301.1Re-query CCDS DB by GeneID:55222See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358141.6 ENSP00000350860.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358141.6Link to Ensembl Protein Viewer:ENSP00000350860.2Re-query CCDS DB by Nucleotide ID:ENST00000358141Re-query CCDS DB by Protein ID:ENSP00000350860
Original member Current member EBI ENST00000395011.5 ENSP00000378458.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395011.5Link to Ensembl Protein Viewer:ENSP00000378458.1Re-query CCDS DB by Nucleotide ID:ENST00000395011Re-query CCDS DB by Protein ID:ENSP00000378458
Original member Current member NCBI NM_001278213.2 NP_001265142.1 Accepted alive Link to Nucleotide Sequence:NM_001278213.2Link to Protein Sequence:NP_001265142.1Re-query CCDS DB by Nucleotide ID:NM_001278213Re-query CCDS DB by Protein ID:NP_001265142Link to BLAST:NP_001265142.1
Original member Current member NCBI NM_018239.4 NP_060709.2 Accepted alive Link to Nucleotide Sequence:NM_018239.4Link to Protein Sequence:NP_060709.2Re-query CCDS DB by Nucleotide ID:NM_018239Re-query CCDS DB by Protein ID:NP_060709Link to BLAST:NP_060709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265142.1 134 Q8TCA0-2 134 100% 0 0
NP_060709.2 134 Q8TCA0-2 134 100% 0 0

Chromosomal Locations for CCDS 7301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70301354 70301508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70323863 70324030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70376452 70376533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGCTGAAGAAGATGGGTGAGGCCGTGGCCAGAGTAGCAAGGAAGGTCAACGAGACGGTGGAGAGCGGCT
CTGACACTCTGGAGCTCCACCTGGAGGGGAACTTCCTACACCGCCTCCCCAGCGAGGTCAGTGCCCTGCA
GCACCTCAAGGCCATTGACCTGTCCCGGAACCAGTTCCAGGACTTCCCTGAGCAGCTTACCGCCCTGCCG
GCGCTGGAGACCATCAACCTGGAGGAGAACGAGATCGTAGATGTGCCCGTGGAGAAGCTGGCCGCCATGC
CAGCCTTGCGCAGCATCAACCTCCGCTTCAACCCACTCAACGCCGAGGTGCGCGTGATCGCCCCGCCGCT
CATCAAGTTTGACATGCTCATGTCTCCGGAAGGCGCAAGAGCCCCCCTACCTTAG

Translation (134 aa):
MLKKMGEAVARVARKVNETVESGSDTLELHLEGNFLHRLPSEVSALQHLKAIDLSRNQFQDFPEQLTALP
ALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGARAPLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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