NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43403.1 Public Homo sapiens 5 NOP16 24 110 108 CCDS HistoryNCBI Gene:51491Re-query CCDS DB by CCDS ID:43403.1Re-query CCDS DB by GeneID:51491See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614830.5 ENSP00000480832.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614830.5Link to Ensembl Protein Viewer:ENSP00000480832.2Re-query CCDS DB by Nucleotide ID:ENST00000614830Re-query CCDS DB by Protein ID:ENSP00000480832
Original member Current member NCBI NM_016391.8 NP_057475.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016391.8Link to Protein Sequence:NP_057475.2Re-query CCDS DB by Nucleotide ID:NM_016391Re-query CCDS DB by Protein ID:NP_057475Link to BLAST:NP_057475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057475.2 178 Q9Y3C1-1 178 100% 0 0

Chromosomal Locations for CCDS 43403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176384231 176384374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176385221 176385327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176386840 176386909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176388235 176388343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176388433 176388539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGCCCAAGGCCAAGGGCAAAACCCGGAGGCAGAAGTTTGGTTACAGTGTCAACCGAAAGCGTCTGAACC
GGAATGCTCGACGGAAGGCAGCGCCGCGGATCGAATGCTCCCACATCCGACATGCCTGGGACCACGCTAA
ATCGGTACGGCAGAACCTGGCCGAGATGGGGTTGGCTGTGGACCCCAACAGGGCGGTGCCCCTCCGTAAG
AGAAAGGTGAAGGCCATGGAGGTGGACATAGAGGAGAGGCCTAAAGAGCTTGTACGGAAGCCCTATGTGC
TGAATGACCTGGAGGCAGAAGCCAGCCTTCCAGAAAAGAAAGGAAATACTCTGTCTCGGGACCTCATTGA
CTATGTACGCTACATGGTAGAGAACCACGGGGAGGACTATAAGGCCATGGCCCGTGATGAGAAGAATTAC
TATCAAGATACCCCAAAACAGATTCGGAGTAAGATCAACGTCTATAAACGCTTTTACCCAGCAGAGTGGC
AAGACTTCCTCGATTCTTTGCAGAAGAGGAAGATGGAGGTGGAGTGA

Translation (178 aa):
MPKAKGKTRRQKFGYSVNRKRLNRNARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAVDPNRAVPLRK
RKVKAMEVDIEERPKELVRKPYVLNDLEAEASLPEKKGNTLSRDLIDYVRYMVENHGEDYKAMARDEKNY
YQDTPKQIRSKINVYKRFYPAEWQDFLDSLQKRKMEVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH