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Report for CCDS46133.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46133.2 Public Homo sapiens 19 ZNF541 24 110 108 CCDS HistoryNCBI Gene:84215Re-query CCDS DB by CCDS ID:46133.2Re-query CCDS DB by GeneID:84215See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 46133.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data. This gene lacks full-length human transcript support, and therefore the exon combination represented in this CCDS ID is inferred; it is supported by tiled partial transcript alignments and by homologous transcript alignments.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46133.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391901.8 ENSP00000375770.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391901.8Link to Ensembl Protein Viewer:ENSP00000375770.3Re-query CCDS DB by Nucleotide ID:ENST00000391901Re-query CCDS DB by Protein ID:ENSP00000375770
Original member Current member NCBI NM_001277075.3 NP_001264004.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277075.3Link to Protein Sequence:NP_001264004.1Re-query CCDS DB by Nucleotide ID:NM_001277075Re-query CCDS DB by Protein ID:NP_001264004Link to BLAST:NP_001264004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264004.1 1346 Q9H0D2-3 1346 100% 0 0

Chromosomal Locations for CCDS 46133.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47521224 47521377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47521479 47521654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47521854 47521994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47528950 47529038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47529577 47529652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47531642 47531745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47532128 47532270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47532909 47532972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47538142 47538439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47539705 47539878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47540176 47540335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47540893 47540951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47544126 47545980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47549245 47549485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47555550 47555856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4041 nt):
ATGGACCAGTACAGCCTTGGAGACGAGGGTGCCCTCCCATCAGAAATGCACCTCCCTTCATTTTCAGAGA
GCCAAGGGCTCAACTGCAGCGACACCCTCAACCGGGATTTGGGTCCCAACACGCGAGGCTTTCTTTATGC
TGGCCTGAGTGGTCTGGACCCGGACCCCAGCCTCCCAACGCCTGACATGTCCAGCGAGGTGCTGGAGGAC
AACTTAGACACCTTGTCCCTGTACTCCGGGAAGGACAGTGATTCTGTGAAGCTGCTGGAGGAGTACGCAG
ATTCGGAGTCTCAGGCATCCTTACAAGACCTGGGGCTAGGTGTGCTTAAGGCTAAAGAGGCTGACGAAGG
AGGAAGGGCCACCTCGGGGAGTGCCAGGAAAGGAAAGCGGCAGCACAGTTCCCCTCAAAACCCACTTCTG
GACTGCAGCCTGTGCGGGAAGGTGTTCAGCAGCGCCAGTTCTCTGAGCAAGCACTACCTGACACACAGCC
AGGAAAGGAAGCACGTCTGCAAAATCTGCAGCAAGGCCTTTAAGCGCCAGGACCACCTGACCGGGCACAT
GCTCACCCACCAGAAGACAAAGCCCTTCGTGTGCATCGAGCAGGGCTGCAGCAAGAGCTACTGCGACTAC
CGCTCTCTGCGCCGGCACTACGAGGTCCATCACGGCCTGTGCATCCTGAAGGAAGCCCCCCCGGAGGAAG
AGGCCTGCGGGGACTCCCCCCACGCCCACGAGTCGGCCGGCCAGCCGCCCCCCAGCAGCCTGCGGTCCCT
GGTGCCCCCAGAGGCCAGGTCCCCCGGCTCCCTCCTGCCCCACCGGGACCTCCTGCGCCGCATCGTGAGT
AGCATCGTCCACCAGAAGACCCCTTCTCCTGGCCCAGCCCCGGCGGGGGCTTCAGACAGCGAAGGGAGGA
ACACTGCCTGTCCCTGCCCCGCCTCATCGGGGTCCTCGTCCTGCACCCCAGCCGGCCCCCACGCGGCCCC
AGCAGCGCTGGACACCGAGCTTCCCGAGGAGCCTTGCCTCCCACAGAAAGAGCCGGCCACTGACGTGTTC
ACAGCCCCTAATTCCAGGGCCGCCGAGAACGGCGCCCCCGACCCGCCAGAGCCGGAGCCAGATACCGCGC
TGCTCCAGGCCCGGTCCACCGCGGAGTGCTGGCCCGAAGGCGGCTCCGTGCCTGCCTGCCTGCCTCTCTT
CCGAGGCCAGACGGTCCCTGCCAGTTCCCAGCCATCGAGCCACAGCTTCCAGTGGCTCCGGAACCTGCCG
GGCTGTCCCAAAAGCAAAGGCAACAACGTGTTTGTTGTCCACAAGCCCTCGGCCGTGCCCTCGCGGGAGG
GCTCCGAGTCTGGCCCGGGACCCAGCAGCGGAAGCCCCTCGGAGGAGTCCCCGCCCGGCCCCGGCGGTGG
CCTGGAGGATGCTCTGCCCTTCCCTGCCGCGCTCCTCAGGGTCCCCGCGGAGGCCCCGAGCGACCCCAGG
TCGGCCAGCGGGGAAGATGACCCCTGCGCCCCCAAGAAGGTCAAGGTCGACTGCGACTCCTTCCTGTGCC
AGAACCCCGGGGAGCCCGGCCTCCAGGAGGCCCAGAAGGCAGGCGGGCTCCCTGCGGATGCCTCGCCGCT
CTTCCGCCAGCTCTTCCTCAAGTCGCAGGAACCTCTTGTGAGCCACGAGCAGATGCAGGTGTTCCAGATG
ATCACCAAGTCCCAGCGGATCTTCTCCCATGCCCAGGTGGCAGCAGTCTCCTCCCAGCTCCCTGCGCCCG
AGGGCAAACCAGCCGCCCTGAGGCCGCTGCAGGGGCCGTGGCCGCAGCAGCCCCCACCACTGGCTCCTGC
TGTGGACTCTCTCCACGCCGGCCCTGGAAACCCCGAGGCAGAGGGCTCCCCAGCCCGCAGGAGAAAAACC
ACACCCGGGGTTCCCAGAGAGGCCTCCCCCGGCAGCACGAGACGAGACGCAAAGGGGGGACTGAAAGTGG
CCGCGGTTCCAACGCCCCTTGCAGCACCGTCTCTGGACCCTTCCAGGAATCCAGACATCTCTTCTCTGGC
CAAGCAGCTGCGATCCTCTAAAGGGACCTTGGACCTGGAGGACATCTTCCCCTCCACAGGCCAACGGCAG
ACCCAGTTAGGTGGGGAGGAGCCACCAGGAGCCTCGCTGCCAGGGAAGCAGGCCCCAGCCGAGAATGGCG
CGGCTTCAAGGATCACAAAAGGTGAAAAGGGCCCAGCCTGCTCCCGGGGTGGAGGCTACCGGCTCTTGGG
CAACCCCAGGGCCCCGCGATTCTCCGGCTTCCGGAAAGAGAAGGCGAAGATGGATATGTGCTGTGCGGCT
TCTCCGAGCCAGGTAGCCATGGCCTCCTTCTCATCGGCCGGGCCCCCGGCAGATCCCTCCAAGTCCAAGC
TGACAATATTCAGCAGAATCCAGGGTGGAAACATCTACAGGCTCCCCCATCCGGTGAAGGAAGAGAATGT
GGCAGGCAGAGGTAACCAGCAAAACGGCAGTCCCACAGACTGGACGAAGCCCAGGAGCACTTTTGTCTGC
AAGAACTGCAGCCAGATGTTTTATACGGAGAAAGGGCTGAGCAGCCACATGTGTTTTCACAGCGACCAGT
GGCCGTCACCTCGAGGGAAGCAGGAACCGCAGGTGTTTGGCACAGAGTTTTGCAAGCCGCTAAGACAGGT
GCTGAGGCCAGAAGGGGACAGGCATAGTCCCCCAGGAACCAAGAAGCCCTTGGACCCCACAGCTGCAGCC
CCTTTGGTGGTCCCCCAATCGATCCCCGTGGTTCCAGTGACCCGACACATAGGGAGCATGGCCATGGGAC
AAGAGAAAGACGGGGAGGAGCGAGACAGCAAGGAGAGCAGCCAGCAGAGAAAGCGGAAGAAGCGGCCCCC
ACCCTCCACGGCTGGGGAGCCTGGCCCTGCAGGATGCCACCAGAGCCGCCTGCGGTCACCCATGTTCCTG
GTGGACTGCCTCCTGAAGGGCTTATTCCAGTGCTCCCCCTACACACCACCCCCAATGCTCAGCCCCATCC
GGGAGGGCTCTGGGGTGTACTTCAACACCCTCTGTTCCACGTCCACTCAGGCCAGCCCTGACCAGCTCAT
CAGCTCCATGCTCGATCAAGTGGATGGGTCCTTTGGCATCTGTGTGGTGAAGGATGACACCAAAATCAGC
ATTGAGCCACATATCAATATAGGAAGCCGGTTTCAGGCAGAGATCCCGGAACTCCAGGAGAGATCCCTGG
CTGGAACTGACGAGCATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATATGATGATCAGCTCAGAGAC
ACAGGATAGAGTGACCGAGCTCTGCAATGTGGCATGCTCCAGCGTGATGCCAGGAGGGGGCACCAACCTG
GAGCTCGCTCTGCACTGCCTGCACGAGGCTCAGGGCAACGTTCAGGTCGCCCTGGAGACTCTTCTGCTCC
GAGGGCCCCACAAGCCACGGACACACCTGCTCGCTGACTATCGCTACACAGGTTCAGACGTCTGGACCCC
TATAGAGAAGAGGCTTTTTAAGAAGGCGTTCTATGCCCACAAGAAGGACTTCTACTTGATACACAAGATG
ATCCAGACAAAGACGGTAGCTCAGTGCGTTGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACT
GTGGCCGAGCCCCAGGGCTAGAAAAGAGGGTCAAGAGAGAGCCGGAGGAAGTGGAAAGGACAGAGGAAAA
GGTCCCATGCAGCCCTCGGGAGAGACCCAGCCACCATCCAACTCCCAAGTTAAAGACCAAGAGTTATAGG
AGGGAGTCCATCCTCAGCTCCAGCCCAAATGCAGGCTCCAAGCGGACCCCCGAGCTGTTGGGAAGTGCAG
AGAGCCAGGGCATTTTTCCATGCAGAGAGTGTGAAAGGGTGTTTGACAAGATCAAGAGTCGAAATGCCCA
TATGAAGCGGCACCGCCTTCAGGACCACGTGGAGCCCATCATCAGGGTGAAGTGGCCAGTGAAGCCCTTC
CAGCTAAAGGAAGAGGAGCTGGGAGCTGACATCGGCCCCCTGCAGTGGTGA

Translation (1346 aa):
MDQYSLGDEGALPSEMHLPSFSESQGLNCSDTLNRDLGPNTRGFLYAGLSGLDPDPSLPTPDMSSEVLED
NLDTLSLYSGKDSDSVKLLEEYADSESQASLQDLGLGVLKAKEADEGGRATSGSARKGKRQHSSPQNPLL
DCSLCGKVFSSASSLSKHYLTHSQERKHVCKICSKAFKRQDHLTGHMLTHQKTKPFVCIEQGCSKSYCDY
RSLRRHYEVHHGLCILKEAPPEEEACGDSPHAHESAGQPPPSSLRSLVPPEARSPGSLLPHRDLLRRIVS
SIVHQKTPSPGPAPAGASDSEGRNTACPCPASSGSSSCTPAGPHAAPAALDTELPEEPCLPQKEPATDVF
TAPNSRAAENGAPDPPEPEPDTALLQARSTAECWPEGGSVPACLPLFRGQTVPASSQPSSHSFQWLRNLP
GCPKSKGNNVFVVHKPSAVPSREGSESGPGPSSGSPSEESPPGPGGGLEDALPFPAALLRVPAEAPSDPR
SASGEDDPCAPKKVKVDCDSFLCQNPGEPGLQEAQKAGGLPADASPLFRQLFLKSQEPLVSHEQMQVFQM
ITKSQRIFSHAQVAAVSSQLPAPEGKPAALRPLQGPWPQQPPPLAPAVDSLHAGPGNPEAEGSPARRRKT
TPGVPREASPGSTRRDAKGGLKVAAVPTPLAAPSLDPSRNPDISSLAKQLRSSKGTLDLEDIFPSTGQRQ
TQLGGEEPPGASLPGKQAPAENGAASRITKGEKGPACSRGGGYRLLGNPRAPRFSGFRKEKAKMDMCCAA
SPSQVAMASFSSAGPPADPSKSKLTIFSRIQGGNIYRLPHPVKEENVAGRGNQQNGSPTDWTKPRSTFVC
KNCSQMFYTEKGLSSHMCFHSDQWPSPRGKQEPQVFGTEFCKPLRQVLRPEGDRHSPPGTKKPLDPTAAA
PLVVPQSIPVVPVTRHIGSMAMGQEKDGEERDSKESSQQRKRKKRPPPSTAGEPGPAGCHQSRLRSPMFL
VDCLLKGLFQCSPYTPPPMLSPIREGSGVYFNTLCSTSTQASPDQLISSMLDQVDGSFGICVVKDDTKIS
IEPHINIGSRFQAEIPELQERSLAGTDEHVASLVWKPWGDMMISSETQDRVTELCNVACSSVMPGGGTNL
ELALHCLHEAQGNVQVALETLLLRGPHKPRTHLLADYRYTGSDVWTPIEKRLFKKAFYAHKKDFYLIHKM
IQTKTVAQCVEYYYIWKKMIKFDCGRAPGLEKRVKREPEEVERTEEKVPCSPRERPSHHPTPKLKTKSYR
RESILSSSPNAGSKRTPELLGSAESQGIFPCRECERVFDKIKSRNAHMKRHRLQDHVEPIIRVKWPVKPF
QLKEEELGADIGPLQW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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