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Report for CCDS33492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33492.1 Public Homo sapiens 20 CASS4 24 110 108 CCDS HistoryNCBI Gene:57091Re-query CCDS DB by CCDS ID:33492.1Re-query CCDS DB by GeneID:57091See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360314.7 ENSP00000353462.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360314.7Link to Ensembl Protein Viewer:ENSP00000353462.3Re-query CCDS DB by Nucleotide ID:ENST00000360314Re-query CCDS DB by Protein ID:ENSP00000353462
Original member Current member EBI ENST00000679887.1 ENSP00000506506.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000679887.1Link to Ensembl Protein Viewer:ENSP00000506506.1Re-query CCDS DB by Nucleotide ID:ENST00000679887Re-query CCDS DB by Protein ID:ENSP00000506506
Original member Current member NCBI NM_001164116.2 NP_001157588.1 Accepted alive Link to Nucleotide Sequence:NM_001164116.2Link to Protein Sequence:NP_001157588.1Re-query CCDS DB by Nucleotide ID:NM_001164116Re-query CCDS DB by Protein ID:NP_001157588Link to BLAST:NP_001157588.1
Original member Current member NCBI NM_020356.4 NP_065089.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020356.4Link to Protein Sequence:NP_065089.2Re-query CCDS DB by Nucleotide ID:NM_020356Re-query CCDS DB by Protein ID:NP_065089Link to BLAST:NP_065089.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157588.1 786 Q9NQ75-1 786 100% 0 0
NP_065089.2 786 Q9NQ75-1 786 100% 0 0

Chromosomal Locations for CCDS 33492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 56412459 56412494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56437164 56437586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56445900 56446001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56450599 56450679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56451819 56453129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56458340 56458747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGAAGGGAACAGGCATCATGGACTGTGCGCCCAAGGCACTCCTGGCCAGGGCACTTTATGACAACTGCC
CTGACTGCTCTGACGAGCTGGCTTTCAGCAGAGGGGACATCCTGACCATTCTGGAGCAACACGTGCCAGA
AAGCGAGGGTTGGTGGAAGTGTTTGCTCCATGGGAGGCAAGGCCTGGCCCCTGCCAACCGCCTCCAAATC
CTCACGGAGGTCGCTGCAGACAGGCCGTGCCCCCCATTCCTGAGAGGCCTGGAAGAAGCTCCTGCCAGCT
CAGAGGAGACCTATCAGGTGCCCACTCTACCCCGCCCTCCCACTCCAGGCCCCGTTTATGAGCAGATGAG
GAGTTGGGCGGAGGGGCCCCAGCCCCCTACTGCCCAAGTCTATGAATTCCCCGACCCTCCCACCAGTGCC
AGAATCATCTGTGAAAAGACTCTCAGCTTTCCAAAACAGGCCATCCTCACGCTTCCCAGACCTGTCCGGG
CCTCACTGCCGACTCTGCCTTCCCAGGTGTATGACGTGCCTACCCAGCACCGGGGCCCCGTGGTCCTGAA
GGAGCCAGAGAAGCAGCAGTTATATGACATACCAGCCAGCCCCAAGAAGGCAGGACTCCATCCCCCAGAC
AGCCAAGCAAGTGGGCAGGGTGTTCCCCTGATATCAGTGACTACCTTAAGAAGAGGCGGTTACAGCACAT
TACCAAATCCTCAGAAATCGGAATGGATTTATGACACTCCAGTGTCTCCAGGAAAGGCCAGCGTCAGAAA
CACGCCTCTCACCAGCTTTGCGGAAGAATCAAGGCCCCACGCTCTCCCCAGTTCCAGCTCCACTTTCTAC
AATCCTCCAAGTGGCAGATCCAGGTCCCTCACTCCACAACTGAATAACAATGTGCCCATGCAGAAAAAAC
TCAGCCTTCCAGAAATTCCTTCTTATGGCTTTCTTGTACCCAGAGGCACATTTCCTTTGGATGAAGATGT
CAGCTACAAGGTTCCTTCAAGCTTTCTGATTCCCCGAGTGGAACAGCAGAACACCAAGCCCAATATTTAT
GACATCCCTAAAGCAACGTCGAGTGTTTCTCAGGCTGGGAAGGAGCTGGAGAAAGCCAAGGAGGTGTCAG
AGAATTCCGCGGGCCATAATTCCTCATGGTTCTCCAGACGGACAACTTCCCCATCTCCTGAACCGGACAG
ATTATCAGGTTCCAGTTCTGACAGCAGAGCTAGCATCGTTTCCTCGTGCTCCACCACATCCACCGACGAC
TCCTCCAGCTCTTCCTCGGAGGAGTCAGCAAAGGAGCTCTCCTTGGACCTGGATGTGGCCAAGGAGACAG
TGATGGCTCTGCAGCACAAGGTGGTCAGCTCTGTCGCTGGCCTGATGCTCTTTGTCAGCAGGAAGTGGAG
ATTCCGAGACTATCTGGAGGCCAACATTGATGCAATCCACAGGTCCACTGATCACATAGAAGAATCTGTA
AGAGAATTTCTGGATTTTGCCCGAGGAGTCCATGGGACTGCCTGTAACCTCACTGACAGTAACCTTCAGA
ACAGAATTCGGGACCAGATGCAGACCATCTCCAACTCCTACCGCATCCTGCTTGAAACAAAGGAAAGCTT
GGATAATCGCAATTGGCCTCTGGAAGTTCTTGTGACTGACAGTGTCCAGAACAGCCCAGATGACCTTGAG
AGGTTTGTCATGGTGGCACGGATGCTTCCAGAAGACATCAAGAGGTTTGCCTCCATTGTCATTGCCAATG
GAAGGCTCCTTTTTAAGCGGAACTGTGAAAAGGAAGAGACTGTGCAGTTGACCCCAAATGCAGAATTTAA
GTGTGAAAAATACATCCAGCCTCCCCAAAGAGAAACTGAATCACACCAAAAGAGTACCCCTTCCACTAAG
CAAAGGGAAGATGAACACTCTTCTGAACTATTAAAGAAAAATAGGGCAAATATCTGTGGACAGAATCCTG
GCCCTCTTATACCTCAGCCTTCGAGTCAACAGACTCCTGAGAGGAAACCCCGCTTATCTGAACACTGCCG
GCTCTACTTTGGGGCGCTCTTCAAAGCCATCAGCGCATTTCACGGCAGCCTCAGCAGCAGCCAGCCCGCG
GAGATCATCACTCAGAGCAAGCTGGTCATCATGGTGGGACAGAAGCTGGTGGACACGCTGTGCATGGAGA
CCCAGGAGAGGGACGTGCGCAACGAGATCCTCCGTGGCAGCAGTCACCTCTGCAGCCTGCTCAAGGACGT
AGCGCTGGCCACTAAGAATGCCGTGCTCACGTACCCCAGCCCTGCCGCGCTGGGGCACCTCCAGGCGGAG
GCTGAGAAGCTGGAGCAACACACGCGGCAGTTCAGAGGGACACTGGGATGA

Translation (786 aa):
MKGTGIMDCAPKALLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI
LTEVAADRPCPPFLRGLEEAPASSEETYQVPTLPRPPTPGPVYEQMRSWAEGPQPPTAQVYEFPDPPTSA
RIICEKTLSFPKQAILTLPRPVRASLPTLPSQVYDVPTQHRGPVVLKEPEKQQLYDIPASPKKAGLHPPD
SQASGQGVPLISVTTLRRGGYSTLPNPQKSEWIYDTPVSPGKASVRNTPLTSFAEESRPHALPSSSSTFY
NPPSGRSRSLTPQLNNNVPMQKKLSLPEIPSYGFLVPRGTFPLDEDVSYKVPSSFLIPRVEQQNTKPNIY
DIPKATSSVSQAGKELEKAKEVSENSAGHNSSWFSRRTTSPSPEPDRLSGSSSDSRASIVSSCSTTSTDD
SSSSSSEESAKELSLDLDVAKETVMALQHKVVSSVAGLMLFVSRKWRFRDYLEANIDAIHRSTDHIEESV
REFLDFARGVHGTACNLTDSNLQNRIRDQMQTISNSYRILLETKESLDNRNWPLEVLVTDSVQNSPDDLE
RFVMVARMLPEDIKRFASIVIANGRLLFKRNCEKEETVQLTPNAEFKCEKYIQPPQRETESHQKSTPSTK
QREDEHSSELLKKNRANICGQNPGPLIPQPSSQQTPERKPRLSEHCRLYFGALFKAISAFHGSLSSSQPA
EIITQSKLVIMVGQKLVDTLCMETQERDVRNEILRGSSHLCSLLKDVALATKNAVLTYPSPAALGHLQAE
AEKLEQHTRQFRGTLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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