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Report for CCDS45498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45498.1 Public Homo sapiens 16 GINS3 24 110 108 CCDS HistoryNCBI Gene:64785Re-query CCDS DB by CCDS ID:45498.1Re-query CCDS DB by GeneID:64785See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426538.6 ENSP00000401018.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426538.6Link to Ensembl Protein Viewer:ENSP00000401018.2Re-query CCDS DB by Nucleotide ID:ENST00000426538Re-query CCDS DB by Protein ID:ENSP00000401018
Original member Current member NCBI NM_001126129.2 NP_001119601.1 Accepted alive Link to Nucleotide Sequence:NM_001126129.2Link to Protein Sequence:NP_001119601.1Re-query CCDS DB by Nucleotide ID:NM_001126129Re-query CCDS DB by Protein ID:NP_001119601Link to BLAST:NP_001119601.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001119601.1 255 Q9BRX5-3 255 100% 0 0

Chromosomal Locations for CCDS 45498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58392602 58392787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58395102 58395218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58403098 58403331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58404499 58404729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGTCAGAGGCTTATTTCCGAGTGGAGTCGGGTGCGCTGGGGCCTGAGGAGAACTTTCTTTCTTTGGACG
AC
ATCCTGATGTCCCACGAGAAGCTGCCGGTGCGCACGGAGACCGCCATGCCTCGCCTTGGCGCTTTCTT
C
CTGGAGCGGAGCGCAGGCGCCGAGACTGACAACGCGGTCCCACAGGGTTTTGCTCTGTTGCCCAGGCTG
GAG
TGCAGTGGTGTGATATGGCTCACTGCAGCCTTGACCTCCCAGGCTCCAGAGATCCTCCCACCTCAGC
CA
CCTATGTGGCTGGTATTGCAGGGTTCCAAGCTTGAACTACCCTTGTGGCTGGCAAAAGGACTTTTTGA
C
AACAAGCGACGGATCCTTTCTGTGGAACTCCCCAAGATCTACCAAGAGGGTTGGAGGACTGTGTTCAGT
GCA
GATCCCAATGTGGTGGACCTCCACAAAATGGGGCCCCATTTCTACGGGTTTGGCTCCCAGCTCCTGC
AT
TTTGACAGTCCCGAGAATGCAGACATTTCCCAGTCTCTGCTGCAGACTTTTATCGGACGTTTTCGCCG
C
ATCATGGACTCCTCACAGAATGCTTACAACGAAGACACTTCAGCCCTGGTAGCCAGGCTAGACGAGATG
GAG
AGGGGCTTATTTCAAACAGGGCAGAAAGGACTGAATGACTTTCAGTGTTGGGAGAAGGGGCAGGCTT
CT
CAGATCACAGCTTCCAACCTCGTTCAGAATTACAAGAAGAGAAAATTCACTGATATGGAAGACTGA


Translation (255 aa):
MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGFALLPRL
E
CSGVIWLTAALTSQAPEILPPQPPMWLVLQ
GSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFS
A
DPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQ
TFIGRFRRIMDSSQNAYNEDTSALVARLDEM
E
RGLFQTGQKGLNDFQCWEKGQASQITASNLVQNYKKRKFTDMED




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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