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Report for CCDS4705.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4705.2 Public Homo sapiens 6 LST1 24 110 108 CCDS HistoryNCBI Gene:7940Re-query CCDS DB by CCDS ID:4705.2Re-query CCDS DB by GeneID:7940See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4705.1
The coding region has been updated to represent an alternative 3' splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4705.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376089.6 ENSP00000365257.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376089.6Link to Ensembl Protein Viewer:ENSP00000365257.2Re-query CCDS DB by Nucleotide ID:ENST00000376089Re-query CCDS DB by Protein ID:ENSP00000365257
Original member Current member EBI ENST00000418507.6 ENSP00000405900.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418507.6Link to Ensembl Protein Viewer:ENSP00000405900.2Re-query CCDS DB by Nucleotide ID:ENST00000418507Re-query CCDS DB by Protein ID:ENSP00000405900
Original member Current member NCBI NM_205838.3 NP_995310.2 Accepted alive Link to Nucleotide Sequence:NM_205838.3Link to Protein Sequence:NP_995310.2Re-query CCDS DB by Nucleotide ID:NM_205838Re-query CCDS DB by Protein ID:NP_995310Link to BLAST:NP_995310.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_995310.2 66 O00453-10 66 100% 0 0

Chromosomal Locations for CCDS 4705.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31587300 31587318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31587944 31587966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31588518 31588676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (201 nt):
ATGTTATCGCGGAATGATGTAAAGAGGCTGGAGAGGAGCTGGGCCCAGGGCTCCTCAGAGCAGGAACTCC
ACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGAGGGACCTGACCTCAGGGGCAGAGACAAGAG
AGGCACCAAGGAGGATCCAAGAGCTGACTATGCCTGCATTGCTGAGAACAAACCCACCTGA

Translation (66 aa):
MLSRNDVKRLERSWAQGSSEQELHYASLQRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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