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Report for CCDS33855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33855.1 Public Homo sapiens 3 TMCC1 24 110 108 CCDS HistoryNCBI Gene:23023Re-query CCDS DB by CCDS ID:33855.1Re-query CCDS DB by GeneID:23023See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33855.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393238.8 ENSP00000376930.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393238.8Link to Ensembl Protein Viewer:ENSP00000376930.3Re-query CCDS DB by Nucleotide ID:ENST00000393238Re-query CCDS DB by Protein ID:ENSP00000376930
Original member Current member NCBI NM_001017395.5 NP_001017395.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017395.5Link to Protein Sequence:NP_001017395.2Re-query CCDS DB by Nucleotide ID:NM_001017395Re-query CCDS DB by Protein ID:NP_001017395Link to BLAST:NP_001017395.2
Original member Current member NCBI NM_001349263.2 NP_001336192.1 Accepted alive Link to Nucleotide Sequence:NM_001349263.2Link to Protein Sequence:NP_001336192.1Re-query CCDS DB by Nucleotide ID:NM_001349263Re-query CCDS DB by Protein ID:NP_001336192Link to BLAST:NP_001336192.1
Original member Current member NCBI NM_001349264.2 NP_001336193.1 Accepted alive Link to Nucleotide Sequence:NM_001349264.2Link to Protein Sequence:NP_001336193.1Re-query CCDS DB by Nucleotide ID:NM_001349264Re-query CCDS DB by Protein ID:NP_001336193Link to BLAST:NP_001336193.1
Original member Current member NCBI NM_001349265.2 NP_001336194.1 Accepted alive Link to Nucleotide Sequence:NM_001349265.2Link to Protein Sequence:NP_001336194.1Re-query CCDS DB by Nucleotide ID:NM_001349265Re-query CCDS DB by Protein ID:NP_001336194Link to BLAST:NP_001336194.1
Original member Current member NCBI NM_001349266.2 NP_001336195.1 Accepted alive Link to Nucleotide Sequence:NM_001349266.2Link to Protein Sequence:NP_001336195.1Re-query CCDS DB by Nucleotide ID:NM_001349266Re-query CCDS DB by Protein ID:NP_001336195Link to BLAST:NP_001336195.1
Original member Current member NCBI NM_001349268.2 NP_001336197.1 Accepted alive Link to Nucleotide Sequence:NM_001349268.2Link to Protein Sequence:NP_001336197.1Re-query CCDS DB by Nucleotide ID:NM_001349268Re-query CCDS DB by Protein ID:NP_001336197Link to BLAST:NP_001336197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017395.2 653 O94876-1 653 100% 0 0
NP_001336192.1 653 O94876-1 653 100% 0 0
NP_001336193.1 653 O94876-1 653 100% 0 0
NP_001336194.1 653 O94876-1 653 100% 0 0
NP_001336195.1 653 O94876-1 653 100% 0 0
NP_001336197.1 653 O94876-1 653 100% 0 0

Chromosomal Locations for CCDS 33855.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129651481 129651795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129654968 129655103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129670330 129671264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129827803 129828378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGGAGCCTTCGGGCAGTGAACAGTTATTTGAGGACCCTGATCCTGGAGGCAAATCCCAAGATGCAGAGG
CCAGAAAGCAGACAGAATCAGAACAAAAATTGTCTAAAATGACCCACAATGCTTTGGAGAACATTAACGT
GATTGGCCAAGGCTTGAAGCATCTCTTCCAGCACCAGCGCAGGAGGTCATCAGTGTCTCCACATGATGTG
CAGCAAATTCAGGCAGATCCAGAACCTGAAATGGATCTGGAAAGCCAGAACGCATGTGCTGAGATTGATG
GTGTCCCCACCCACCCCACAGCTCTGAATCGTGTCCTGCAGCAGATTCGAGTGCCACCCAAGATGAAGAG
AGGGACAAGCTTGCATAGTAGGCGGGGCAAGCCAGAGGCCCCAAAGGGAAGTCCCCAAATCAACAGGAAG
TCTGGTCAGGAGATGACAGCTGTTATGCAGTCAGGCCGACCCAGGTCTTCATCCACAACTGATGCACCTA
CCAGCTCTGCTATGATGGAAATAGCTTGTGCTGCTGCTGCTGCTGCTGCTGCATGTCTACCAGGAGAGGA
GGGAACTGCGGAGCGGATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCC
AGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCA
TTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGA
CAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTC
TTTGAGAAGAAGAACCAGAAATCTGCCCAAACTATCCTCCAGCTGCAAAAGAAACTTGAGCACTACCACA
GGAAGCTCAGAGAGGTAGAGCAGAATGGGATCCCCCGGCAGCCAAAGGATGTCTTCAGGGACATGCACCA
GGGTCTGAAGGATGTAGGAGCAAAGGTGACTGGCTTCAGTGAAGGTGTGGTGGATAGTGTCAAAGGTGGG
TTTTCCAGCTTCTCCCAGGCCACCCATTCAGCAGCAGGCGCTGTAGTCTCAAAGCCCAGAGAGATTGCCT
CACTCATTCGGAACAAATTTGGCAGTGCAGACAACATCCCCAACCTGAAGGACTCTTTAGAGGAAGGGCA
AGTGGATGATGCGGGGAAGGCTTTGGGAGTGATTTCAAACTTTCAGTCTAGCCCAAAATATGGTAGTGAA
GAAGATTGTTCTAGTGCCACTTCAGGCTCAGTGGGAGCCAACAGCACCACAGGGGGCATCGCTGTAGGAG
CATCCAGCTCCAAAACAAACACCCTGGACATGCAGAGCTCAGGATTTGATGCACTACTACATGAGATCCA
GGAGATCCGGGAAACCCAGGCCAGACTAGAGGAATCCTTTGAGACTCTCAAGGAACATTATCAGAGGGAC
TATTCCTTAATAATGCAGACCTTACAGGAGGAGCGATATAGATGTGAACGATTGGAAGAACAGCTAAATG
ACCTAACAGAGCTCCACCAGAATGAAATCTTGAACTTGAAGCAGGAACTGGCAAGCATGGAAGAAAAAAT
CGCGTATCAGTCCTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACGCGCATCTCC
AAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTGCAGCTAGAAGGGCTGGAGAATGCCACTGCCCGGA
ACCTTCTGGGCAAACTCATCAACATCCTCCTGGCTGTCATGGCAGTCCTTTTGGTCTTTGTCTCCACTGT
AGCCAACTGTGTGGTCCCCCTCATGAAGACTCGCAACAGGACGTTCAGCACTTTATTCCTTGTGGTTTTT
ATTGCCTTTCTCTGGAAGCACTGGGACGCCCTCTTCAGCTATGTGGAACGGTTCTTTTCATCCCCTAGAT
GA

Translation (653 aa):
MEPSGSEQLFEDPDPGGKSQDAEARKQTESEQKLSKMTHNALENINVIGQGLKHLFQHQRRRSSVSPHDV
QQIQADPEPEMDLESQNACAEIDGVPTHPTALNRVLQQIRVPPKMKRGTSLHSRRGKPEAPKGSPQINRK
SGQEMTAVMQSGRPRSSSTTDAPTSSAMMEIACAAAAAAAACLPGEEGTAERIERLEVSSLAQTSSAVAS
STDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAARIKQV
FEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGG
FSSFSQATHSAAGAVVSKPREIASLIRNKFGSADNIPNLKDSLEEGQVDDAGKALGVISNFQSSPKYGSE
EDCSSATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLHEIQEIRETQARLEESFETLKEHYQRD
YSLIMQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRIS
KMELQQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFVSTVANCVVPLMKTRNRTFSTLFLVVF
IAFLWKHWDALFSYVERFFSSPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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