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Report for CCDS8659.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8659.2 Public Homo sapiens 12 GSG1 24 110 108 CCDS HistoryNCBI Gene:83445Re-query CCDS DB by CCDS ID:8659.2Re-query CCDS DB by GeneID:83445See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8659.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396302.7 ENSP00000379596.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396302.7Link to Ensembl Protein Viewer:ENSP00000379596.3Re-query CCDS DB by Nucleotide ID:ENST00000396302Re-query CCDS DB by Protein ID:ENSP00000379596
Original member Current member NCBI NM_031289.5 NP_112579.2 Accepted alive Link to Nucleotide Sequence:NM_031289.5Link to Protein Sequence:NP_112579.2Re-query CCDS DB by Nucleotide ID:NM_031289Re-query CCDS DB by Protein ID:NP_112579Link to BLAST:NP_112579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112579.2 285 Q2KHT4-4 285 100% 0 0

Chromosomal Locations for CCDS 8659.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 13085148 13085243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13087152 13087263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13087907 13088059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13088738 13088909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13090503 13090818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13095599 13095607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCCAAGATGGAGCTCTCGAAGGCCTTCTCTGGCCAGCGGACACTCCTATCTGCCATCCTCAGCATGC
TATCACTCAGCTTCTCCACAACATCCCTGCTCAGCAACTACTGGTTTGTGGGCACACAGAAGGTGCCCAA
GCCCCTGTGCGAGAAAGGTCTGGCAGCCAAGTGCTTTGACATGCCAGTGTCCCTGGATGGAGATACCAAC
ACATCCACCCAGGAGGTGGTACAATACAACTGGGAGACTGGGGATGACCGGTTCTCCTTCCGGAGCTTCC
GGAGTGGCATGTGGCTATCCTGTGAGGAAACTGTGGAAGAACCAGGGGAGAGGTGCCGAAGTTTCATTGA
ACTTACACCACCAGCCAAGAGAGGTGAGAAAGGACTACTGGAATTTGCCACGTTGCAAGGCCCATGTCAC
CCCACTCTCCGATTTGGAGGGAAGCGGTTGATGGAGAAGGCTTCCCTCCCCTCCCCTCCCTTGGGGCTTT
GTGGCAAAAATCCTATGGTTATCCCTGGGAACGCAGATCACCTACATCGGACTTCAATTCATCAGCTTCC
TCCTGCTACTAACAGACTTGCTACTCACTGGGAACCCTGCCTGTGGGCTCAAACTGAGCGCCTTTGCTGC
TGTTTCCTCTGTCCTGTCAGGTCTCCTGGGGATGGTGGCCCACATGATGTATTCACAAGTCTTCCAAGCG
ACTGTCAACTTGGGTCCAGAAGACTGGAGACCACATGTTTGGAATTATGGCTGGGCCTTCTACATGGCCT
GGCTCTCCTTCACCTGCTGCATGGCGTCGGCTGTCACCACCTTCAACACGTACACCAGGATGGTGCTGGA
GTTCAAGTGCAAGCATAG

Translation (285 aa):
MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTN
TSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKRGEKGLLEFATLQGPCH
PTLRFGGKRLMEKASLPSPPLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQTERLCC
CFLCPVRSPGDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGAG
VQVQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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