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Report for CCDS9464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9464.1 Public Homo sapiens 13 SLITRK1 24 110 108 CCDS HistoryNCBI Gene:114798Re-query CCDS DB by CCDS ID:9464.1Re-query CCDS DB by GeneID:114798See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9464.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377084.3 ENSP00000366288.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377084.3Link to Ensembl Protein Viewer:ENSP00000366288.2Re-query CCDS DB by Nucleotide ID:ENST00000377084Re-query CCDS DB by Protein ID:ENSP00000366288
Original member Current member EBI ENST00000674365.1 ENSP00000501349.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674365.1Link to Ensembl Protein Viewer:ENSP00000501349.1Re-query CCDS DB by Nucleotide ID:ENST00000674365Re-query CCDS DB by Protein ID:ENSP00000501349
Original member Current member NCBI NM_001281503.2 NP_001268432.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001281503.2Link to Protein Sequence:NP_001268432.1Re-query CCDS DB by Nucleotide ID:NM_001281503Re-query CCDS DB by Protein ID:NP_001268432Link to BLAST:NP_001268432.1
Original member Current member NCBI NM_052910.2 NP_443142.1 Accepted alive Link to Nucleotide Sequence:NM_052910.2Link to Protein Sequence:NP_443142.1Re-query CCDS DB by Nucleotide ID:NM_052910Re-query CCDS DB by Protein ID:NP_443142Link to BLAST:NP_443142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268432.1 696 Q96PX8 696 100% 0 0
NP_443142.1 696 Q96PX8 696 100% 0 0

Chromosomal Locations for CCDS 9464.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 83879417 83881507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGCTGCTTTGGATTCTGTTGCTGGAGACGTCTCTTTGTTTTGCCGCTGGAAACGTTACAGGGGACGTTT
GCAAAGAGAAGATCTGTTCCTGCAATGAGATAGAAGGGGACCTACACGTAGACTGTGAAAAAAAGGGCTT
CACAAGTCTGCAGCGTTTCACTGCCCCGACTTCCCAGTTTTACCATTTATTTCTGCATGGCAATTCCCTC
ACTCGACTTTTCCCTAATGAGTTCGCTAACTTTTATAATGCGGTTAGTTTGCACATGGAAAACAATGGCT
TGCATGAAATCGTTCCGGGGGCTTTTCTGGGGCTGCAGCTGGTGAAAAGGCTGCACATCAACAACAACAA
GATCAAGTCTTTTCGAAAGCAGACTTTTCTGGGGCTGGACGATCTGGAATATCTCCAGGCTGATTTTAAT
TTATTACGAGATATAGACCCGGGGGCCTTCCAGGACTTGAACAAGCTGGAGGTGCTCATTTTAAATGACA
ATCTCATCAGCACCCTACCTGCCAACGTGTTCCAGTATGTGCCCATCACCCACCTCGACCTCCGGGGTAA
CAGGCTGAAAACGCTGCCCTATGAGGAGGTCTTGGAGCAAATCCCTGGTATTGCGGAGATCCTGCTAGAG
GATAACCCTTGGGACTGCACCTGTGATCTGCTCTCCCTGAAAGAATGGCTGGAAAACATTCCCAAGAATG
CCCTGATCGGCCGAGTGGTCTGCGAAGCCCCCACCAGACTGCAGGGTAAAGACCTCAATGAAACCACCGA
ACAGGACTTGTGTCCTTTGAAAAACCGAGTGGATTCTAGTCTCCCGGCGCCCCCTGCCCAAGAAGAGACC
TTTGCTCCTGGACCCCTGCCAACTCCTTTCAAGACAAATGGGCAAGAGGATCATGCCACACCAGGGTCTG
CTCCAAACGGAGGTACAAAGATCCCAGGCAACTGGCAGATCAAAATCAGACCCACAGCAGCGATAGCGAC
GGGTAGCTCCAGGAACAAACCCTTAGCTAACAGTTTACCCTGCCCTGGGGGCTGCAGCTGCGACCACATC
CCAGGGTCGGGTTTAAAGATGAACTGCAACAACAGGAACGTGAGCAGCTTGGCTGATTTGAAGCCCAAGC
TCTCTAACGTGCAGGAGCTTTTCCTACGAGATAACAAGATCCACAGCATCCGAAAATCGCACTTTGTGGA
TTACAAGAACCTCATTCTGTTGGATCTGGGCAACAATAACATCGCTACTGTAGAGAACAACACTTTCAAG
AACCTTTTGGACCTCAGGTGGCTATACATGGATAGCAATTACCTGGACACGCTGTCCCGGGAGAAATTCG
CGGGGCTGCAAAACCTAGAGTACCTGAACGTGGAGTACAACGCTATCCAGCTCATCCTCCCGGGCACTTT
CAATGCCATGCCCAAACTGAGGATCCTCATTCTCAACAACAACCTGCTGAGGTCCCTGCCTGTGGACGTG
TTCGCTGGGGTCTCGCTCTCTAAACTCAGCCTGCACAACAATTACTTCATGTACCTCCCGGTGGCAGGGG
TGCTGGACCAGTTAACCTCCATCATCCAGATAGACCTCCACGGAAACCCCTGGGAGTGCTCCTGCACAAT
TGTGCCTTTCAAGCAGTGGGCAGAACGCTTGGGTTCCGAAGTGCTGATGAGCGACCTCAAGTGTGAGACG
CCGGTGAACTTCTTTAGAAAGGATTTCATGCTCCTCTCCAATGACGAGATCTGCCCTCAGCTGTACGCTA
GGATCTCGCCCACGTTAACTTCGCACAGTAAAAACAGCACTGGGTTGGCGGAGACCGGGACGCACTCCAA
CTCCTACCTAGACACCAGCAGGGTGTCCATCTCGGTGTTGGTCCCGGGACTGCTGCTGGTGTTTGTCACC
TCCGCCTTCACCGTGGTGGGCATGCTCGTGTTTATCCTGAGGAACCGAAAGCGGTCCAAGAGACGAGATG
CCAACTCCTCCGCGTCCGAGATTAATTCCCTACAGACAGTCTGTGACTCTTCCTACTGGCACAATGGGCC
TTACAACGCAGATGGGGCCCACAGAGTGTATGACTGTGGCTCTCACTCGCTCTCAGACTAA

Translation (696 aa):
MLLWILLLETSLCFAAGNVTGDVCKEKICSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQFYHLFLHGNSL
TRLFPNEFANFYNAVSLHMENNGLHEIVPGAFLGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFN
LLRDIDPGAFQDLNKLEVLILNDNLISTLPANVFQYVPITHLDLRGNRLKTLPYEEVLEQIPGIAEILLE
DNPWDCTCDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQDLCPLKNRVDSSLPAPPAQEET
FAPGPLPTPFKTNGQEDHATPGSAPNGGTKIPGNWQIKIRPTAAIATGSSRNKPLANSLPCPGGCSCDHI
PGSGLKMNCNNRNVSSLADLKPKLSNVQELFLRDNKIHSIRKSHFVDYKNLILLDLGNNNIATVENNTFK
NLLDLRWLYMDSNYLDTLSREKFAGLQNLEYLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDV
FAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSEVLMSDLKCET
PVNFFRKDFMLLSNDEICPQLYARISPTLTSHSKNSTGLAETGTHSNSYLDTSRVSISVLVPGLLLVFVT
SAFTVVGMLVFILRNRKRSKRRDANSSASEINSLQTVCDSSYWHNGPYNADGAHRVYDCGSHSLSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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