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Report for CCDS41211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41211.1 Public Mus musculus X Msl3 23 108 98 CCDS HistoryNCBI Gene:17692Re-query CCDS DB by CCDS ID:41211.1Re-query CCDS DB by GeneID:17692See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112137.1 ENSMUSP00000107765.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112137.1Link to Ensembl Protein Viewer:ENSMUSP00000107765.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112137Re-query CCDS DB by Protein ID:ENSMUSP00000107765
Original member Current member NCBI NM_010832.6 NP_034962.2 Accepted alive Link to Nucleotide Sequence:NM_010832.6Link to Protein Sequence:NP_034962.2Re-query CCDS DB by Nucleotide ID:NM_010832Re-query CCDS DB by Protein ID:NP_034962Link to BLAST:NP_034962.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034962.2 466 Q9WVG9-2 466 100% 0 0

Chromosomal Locations for CCDS 41211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 168654869 168654968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168656963 168657047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168658615 168658714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168662431 168662540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168664043 168664305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168666943 168667101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168668631 168668791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168669490 168669615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168670220 168670311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168671143 168671243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168671795 168671890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 168673728 168673735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGCCAAGTTGGGATAGATGGGCAGCTGAAGAACATGTGCTACACGATACAGATGAAAACCGGAGATTAC
AGCGCAAATTGGCCAAAAAAGCAATAGCTCGCCTGAGAGGTACAGGAAAAAAGAAGAGGCGCTGTAGGTT
GCCTGGTGTCGACTCTGTCTTAAAAAGCGTGCCAGTTAAAGAAAAATCTAAAAATGACGAAAACTCAGTA
AGCAGCACCTGTCATGAGAGCTGTGGAGAAAAGAATGGAGGGATAAAAGAACACCGTCAGCGTCGTATTA
AAGTAAAGGCTAAAGCGAAAAAAAAGGTATTGTCGCTGCGTTCAAGAAAGGAAATGGATGAAAGAACAAT
CACTATAGATATCCCCGATGTTCTCAAGAAGCAGCTAGAGGATGACTGTTACTATATCAACAGGAGGAAA
CGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACAATTTTGGAATCCTATGTGAAACATTTTGCTA
TTAATGCAGCCTTTTCGGCCAATGAGAGGCCTCGTCACCATCATGCCATGATGCACACGCACATGAATGT
GCACTACGTCCCAGCTGAAAAGAATGTTGACCTTTGTAAGGAAATGGTGGATGGATTACGAATAACCTTT
GATTATACGCTCCCATTAGTGTTGCTCTACCCATATGAACAAACCCAATATAAAAGGGTGACATCGTCAA
AATTTTTTCTTCCTATTAAGGAAAGTACCACGACAACTAATAGGAGCCAGGAAGAGCTGTCTCCTAGCCC
GCCTTTGTTGAATCCATCCACACCACAGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACCCCC
AAGAGGCGCAAAGCCGAGCCAGAAGCACTGCAGTCTCTCAGGCGGTCCACAAGGCACAGCACCAATTGTG
ACAGGCTGTCTGAGAGCAGCTCCTCCCCTCAGCCGAAGCGCCGGCAACAGGACACATCTGCCAGCATGCC
GAAGCTGTTTCTGCACTTGGAAAAGAAGACACCTGTGCACAGCAGATCATCTTCCCCCATTCCTCTGACT
CCAAGTAAGGATGGGAGTGCTGTATTTGCTGGCTTCGAAGGGAGAAGACCCAATGAAATCAATGAGGTCC
TGTCTTGGAAACTTGTGCCTGACAATTATCCGCCAGGAGACCAGCCACCTCCCCCTTCGTACATTTATGG
TGCACAGCATTTGCTCCGGTTATTTGTGAAACTTCCAGAAATCCTTGGGAAGATGTCCTTCTCTGAGAAG
AATCTGAAGGCTTTACTGAAGCACTTTGATCTCTTTCTGAGGTTTTTAGCAGAATACCATGATGACTTCT
TCCCGGAGTCGGCTTATGTCGCTGCCTGTGAGGCACACTACAGCACCAAGAACCCCAGGGCAATTTATTA
A

Translation (466 aa):
MPSWDRWAAEEHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKSKNDENSV
SSTCHESCGEKNGGIKEHRQRRIKVKAKAKKKVLSLRSRKEMDERTITIDIPDVLKKQLEDDCYYINRRK
RLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHTHMNVHYVPAEKNVDLCKEMVDGLRITF
DYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSPSPPLLNPSTPQSTESQPPTGEPATP
KRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPIPLT
PSKDGSAVFAGFEGRRPNEINEVLSWKLVPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEK
NLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTKNPRAIY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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