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Report for CCDS44.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44.3 Public Homo sapiens 1 PRXL2B 24 110 108 CCDS HistoryNCBI Gene:127281Re-query CCDS DB by CCDS ID:44.3Re-query CCDS DB by GeneID:127281See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 44.1
The coding region has been updated to start at a downstream in-frame start codon that has better support from conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419916.8 ENSP00000394405.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000419916.8Link to Ensembl Protein Viewer:ENSP00000394405.4Re-query CCDS DB by Nucleotide ID:ENST00000419916Re-query CCDS DB by Protein ID:ENSP00000394405
Original member Current member NCBI NM_152371.5 NP_689584.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152371.5Link to Protein Sequence:NP_689584.5Re-query CCDS DB by Nucleotide ID:NM_152371Re-query CCDS DB by Protein ID:NP_689584Link to BLAST:NP_689584.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689584.5 198 Q8TBF2-1 198 100% 0 0

Chromosomal Locations for CCDS 44.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 2586886 2586948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2587091 2587295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2587741 2587792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2588390 2588453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2588550 2588625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2588922 2589040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2589410 2589427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGAGCACGGTGGACCTTGCTCGCGTGGGCGCGTGCATCCTGAAGCATGCGGTGACCGGGGAGGCCGTGG
AGCTGCGGAGCCTGTGGCGGGAGCACGCGTGCGTGGTGGCCGGGCTGCGGCGCTTCGGGTGCGTGGTGTG
CCGCTGGATCGCCCAGGACCTCAGCAGCCTTGCTGGGCTCCTGGACCAACACGGCGTGCGCCTGGTGGGC
GTAGGGCCCGAGGCCCTGGGTCTGCAGGAGTTCCTGGACGGCGACTACTTCGCGGGAGAGCTCTACCTGG
ATGAGAGCAAGCAGCTTTACAAGGAGCTAGGCTTCAAGCGGTACAACAGCCTGAGCATCCTCCCAGCAGC
TCTGGGGAAGCCCGTGCGTGATGTGGCTGCCAAGGCCAAGGCTGTTGGCATCCAGGGGAACTTGTCTGGG
GACCTGCTGCAGAGCGGAGGGCTGCTGGTGGTCAGCAAAGGTGGTGATAAAGTGCTCCTGCATTTCGTCC
AGAAGTCCCCAGGCGACTACGTCCCCAAGGAGCACATCCTGCAGGTCCTGGGCATCTCTGCGGAGGTCTG
TGCCAGCGACCCGCCTCAGTGTGACAGAGAGGTGTGA

Translation (198 aa):
MSTVDLARVGACILKHAVTGEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVG
VGPEALGLQEFLDGDYFAGELYLDESKQLYKELGFKRYNSLSILPAALGKPVRDVAAKAKAVGIQGNLSG
DLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVLGISAEVCASDPPQCDREV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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