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Report for CCDS23122.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23122.2 Public Mus musculus 9 Ube4a 23 108 98 CCDS HistoryNCBI Gene:140630Re-query CCDS DB by CCDS ID:23122.2Re-query CCDS DB by GeneID:140630See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 23122.1
The coding region has been updated to extend both the N- and C-termini based on better transcript and homology support, and to represent an alternative splice pattern based on AK172893.1. This mRNA lacks an exon in the mid-coding region, but there is currently no full-length transcript support to include this exon. The update results in a more extended ubiquitin fusion degradation protein 2 (UFD2) domain, and adds a C-terminal RING-finger domain to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23122.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117506.8 ENSMUSP00000113346.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117506.8Link to Ensembl Protein Viewer:ENSMUSP00000113346.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117506Re-query CCDS DB by Protein ID:ENSMUSP00000113346
Original member Current member NCBI NM_145400.3 NP_663375.3 Accepted alive Link to Nucleotide Sequence:NM_145400.3Link to Protein Sequence:NP_663375.3Re-query CCDS DB by Nucleotide ID:NM_145400Re-query CCDS DB by Protein ID:NP_663375Link to BLAST:NP_663375.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663375.3 1028 E9Q735 1028 100% 0 0

Chromosomal Locations for CCDS 23122.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44925849 44925975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44929662 44929819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44932342 44932489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44933298 44933478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44935327 44935501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44937849 44937949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44939961 44940148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44941154 44941286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44942566 44942870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44944805 44944925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44946184 44946517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44948026 44948217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44948782 44948984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44949733 44949892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44950781 44950933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44951990 44952102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44952942 44953115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44959979 44960099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3087 nt):
ATGACAGACCAGGAGAATAACAACAACATCTCAAGTAACCCCTTTGCTGCTCTTTTTGGCTCCCTGGCTG
ATGCCAAGCAGTTTGCAGCAATCCAGAAAGAGCAGCTGAAGCAGCAGTCCGATGAGCTCCCAGCAAGCCC
AGATGACTCGGATAATAGTGTGTCAGAGAGCCTGGATGAGTTTGACTACTCTGTATCTGAGATTAGCCGC
TCCTTCCGGACACACCAAGAAATGTGTGAGCAACTCAACATCAATCACATGATCCAGAGGATCTTCCTCA
TCACCCTGGACAACAGTGATCCAAGCTTGAAAAGCGGGAATGGCATCCCCAGCCGTTGTGTGTACTTGGA
AGAAATGGCAGTAGAGCTGGAAGATCAAGACTGGCTTGATATGAGCAATGTTGAGCAGGCCATCTTTGCT
CGATTATTGCTTCAAGATCCAGGAAACCACTTGATCAGCATGACTTCCTCCACAACTTTAAATCTCTCTG
CTGATCGTGATGCAGGAGAGAGGCACATCTTCTGTTACCTTTACTCCTGCTTCCAGAGAGCCAAGGAAGA
GATTACCAAAGTTCCAGAAAACCTACTCCCCTTTGCAGTGCAGTGCAGAAACCTCACTGTGTCCAACACT
CGAACAGTTCTCCTCACCCCAGAGATCTATGTTGACCAAAACATCCATGAGCAACTGGTAGATTTGATGT
TGGAAGCTATTCAGGGAGCCCATTTTGAAGATGTAACTGAATTTTTAGAAGAGGTCATTGAAGCCTTGCT
GTTGGATGAGGAGGTTCGAACATTTCCTGAAGTCATGATTCCAGTGTTTGATATTTTACTCAGCCGAATA
AAAGATCTGGAACTCTGCCAGATCCTCCTGTATGCATATCTGGACATTCTTCTCTATTTCACTAGGCAGA
AGGATATGGCCAAGGTGTTTTTAGAATACATTCAGCCCAAGGATCCCAGCAATGGGCAGATGTATCAGAA
GACCTTGCTGGGAGTCATCCTGAATATCTCGTGCTTGTTAAAGACTCCGGGTGTGGTAGAGAACCATGGC
TTCTTCCTGAATCCATCCCGTTCCAGTCCTCAGGAGATCAAAGTACAGGAGGCCAACATCCATCAGTTCA
TGGCTCAGTTCCATGAAAAGATCTACCAGATGCTGAAGAACTTGCTCCAGCTCTCTCCAGAAACCAAGCA
CTGTATCTTGTTCTGGCTTGGAAACTGTTTGCATGCAAATGCAGGCCGCACCAAGATCTGGGCCAATCAG
ATGCCCGAAATCTTCTTCCAAATGTATGCCTCGGATGCCTTCTTTCTGAATCTGGGTGCTGCCCTCCTGA
AGCTGTGCCAGCCATTCTGCAAGCCCAGATCCTCCCGGCTCCTCACCTTTAACCCCACGTACTGTGTCCT
CAAGGACTTGAATGATGAAGAACGAAAAATTAAAAGTGTGCATATGAGAGGTTTGGACAAGGAGACCTGT
CTGATCCCAGCTGTGCAGGAGCCAACGTTCCCCCAGAGCTACAACCTTGTGACGGAGAACCTGGCCCTGA
CAGAGTATACCTTGTACTTGGGATTTCACAGGTTGCATGATCAGATGGTAAAAATCAACCAAAATCTGCA
TCGGCTGCAGGTTGCCTGGCGGGATGCTCAGCAGAGTTCTAGCCCTGCTGCTGACAATCTCCGTGAGCAG
TTCGAACGCCTGATGACCATCTATCTCTCTACCAAGACTGCTATGACTGAACCCCAGATGCTGCAAAACT
GTCTGAATTTGCAGGTGTCCATGGCTGTTCTGCTGGTTCAACTGGCCATAGGCAATGAGGGCTCCCAGCC
AATAGAACTAAGTTTCCCTTTGCCAGATGGCTACAGCTCTTTGGCTTATGTGCCAGAATTTTTTGCAGAT
AACTTGGGTGATTTCCTCATTTTCCTCCGGCGCTTTGCTGAGGACATCTTGGAGACGTCAGCAGACTCCC
TGGAGCATGTCCTTCATTTTATCACCATTTTCACTGGAAGCATAGAAAGAATGAAGAATCCTCACCTGAG
GGCCAAACTAGCAGAGGTGTTAGAAGCAGTGATGCCTCACCTAGACCAGACCCCAAGCCCCTTGGTGTCC
AGTGTGTTCCACCGGAAACGTGTGTTCTGCAACTTTCCATACGCTCCCCAACTTGCAGAAGCTTTGATCA
AGGTGTTTGTGGACATCGAGTTTACAGGGGACCCCCATCAATTTGAACAGAAGTTTAATTACCGCCGTCC
TATGTATCCCATCCTAAGATACATGTGGGGGACAGATTGCTATCGGGAGAGCATTAAGTATTTGAGCAAG
ATAAAGATTCAGCAGATTGAGAAAGACCGAGGAGAATGGGAGAGTCTGACACCAGAAGCCCGCCGAGAGA
AAGAGGCAGGTCTGCAGATGTTTGGGCAGCTGGCACGGTTCCATAACATCATGTCCAATGAAACAATTGG
TACCCTTTCCTTCCTGACATCAGAGATCAAGTCGCTGTTTGTGCATCCGTTCCTGGCCGAGCGCATCATC
TCCATGCTCAACTACTTCCTGCAGCACCTGGTGGGCCCCAAGATGGGTGCCCTCAAAGTCAAGGACTTCA
GCGAATTTGACTTCAAACCTCAGCAGCTCGTATCAGACATCTGCACTATCTACTTAAATCTTGGGGATGA
GGAGAACTTCTGTGCCACTGTGCCCAAAGACGGACGTTCCTATTCTCCGACTCTCTTTGCACAGACAGTC
CGTGTCCTGAAGAAAATCAATAAGCCCGGGAATATGATCGTGGCTTTCAGTAACTTGGCAGAGAGAATCA
AGTCTCTTGCAGACCTCCAACAACAAGAGGAGGAGACATATGCAGACGCCTGTGATGAGTTCCTGGATCC
CATCATGAGCACACTGATGTCTGACCCTGTGGTGCTTCCATCTTCCAGAGTCACTGTGGACAGATCCACC
ATTGCTAGGCATTTACTCAGTGACCAAACAGATCCTTTTAACCGTAGTCCCCTTACCATGGACCAGATCC
GGCCCAACACAGAACTGAAAGAAAAAATCCAACGGTGGCTCGCAGAAAGGAAGCAACAAAAGGAGCAGCC
TGAATAA

Translation (1028 aa):
MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSDELPASPDDSDNSVSESLDEFDYSVSEISR
SFRTHQEMCEQLNINHMIQRIFLITLDNSDPSLKSGNGIPSRCVYLEEMAVELEDQDWLDMSNVEQAIFA
RLLLQDPGNHLISMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVPENLLPFAVQCRNLTVSNT
RTVLLTPEIYVDQNIHEQLVDLMLEAIQGAHFEDVTEFLEEVIEALLLDEEVRTFPEVMIPVFDILLSRI
KDLELCQILLYAYLDILLYFTRQKDMAKVFLEYIQPKDPSNGQMYQKTLLGVILNISCLLKTPGVVENHG
FFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILFWLGNCLHANAGRTKIWANQ
MPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTYCVLKDLNDEERKIKSVHMRGLDKETC
LIPAVQEPTFPQSYNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRLQVAWRDAQQSSSPAADNLREQ
FERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAIGNEGSQPIELSFPLPDGYSSLAYVPEFFAD
NLGDFLIFLRRFAEDILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPSPLVS
SVFHRKRVFCNFPYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDCYRESIKYLSK
IKIQQIEKDRGEWESLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERII
SMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTV
RVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVTVDRST
IARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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