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Report for CCDS56305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56305.1 Public Homo sapiens 4 PPP2R2C 24 110 108 CCDS HistoryNCBI Gene:5522Re-query CCDS DB by CCDS ID:56305.1Re-query CCDS DB by GeneID:5522See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506140.5 ENSP00000423649.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506140.5Link to Ensembl Protein Viewer:ENSP00000423649.1Re-query CCDS DB by Nucleotide ID:ENST00000506140Re-query CCDS DB by Protein ID:ENSP00000423649
Original member Current member EBI ENST00000507294.1 ENSP00000425247.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507294.1Link to Ensembl Protein Viewer:ENSP00000425247.1Re-query CCDS DB by Nucleotide ID:ENST00000507294Re-query CCDS DB by Protein ID:ENSP00000425247
Original member Current member NCBI NM_001206994.2 NP_001193923.1 Accepted alive Link to Nucleotide Sequence:NM_001206994.2Link to Protein Sequence:NP_001193923.1Re-query CCDS DB by Nucleotide ID:NM_001206994Re-query CCDS DB by Protein ID:NP_001193923Link to BLAST:NP_001193923.1
Original member Current member NCBI NM_001206995.2 NP_001193924.1 Accepted alive Link to Nucleotide Sequence:NM_001206995.2Link to Protein Sequence:NP_001193924.1Re-query CCDS DB by Nucleotide ID:NM_001206995Re-query CCDS DB by Protein ID:NP_001193924Link to BLAST:NP_001193924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193923.1 440 Q9Y2T4-4 440 100% 0 0
NP_001193924.1 440 Q9Y2T4-4 440 100% 0 0

Chromosomal Locations for CCDS 56305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6323302 6323593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6329262 6329353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6333562 6333731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6347846 6348010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6372523 6372700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6375819 6375931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6378407 6378572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6380997 6381094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6535271 6535319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGCGTGAGGCGGACACGTTGAGGCCACCTCAGCTGATGGAAGTTTCCGCTGACATCATCTCTACCGTTG
AGTTCAACCACACGGGAGAGCTGCTGGCCACAGGTGACAAGGGCGGCCGGGTCGTCATCTTCCAGCGGGA
ACCAGAGAGTAAAAATGCGCCCCACAGCCAGGGCGAATACGACGTGTACAGCACTTTCCAGAGCCACGAG
CCGGAGTTTGACTATCTCAAGAGCCTGGAGATAGAGGAGAAGATCAACAAGATCAAGTGGCTCCCACAGC
AGAACGCCGCCCACTCACTCCTGTCCACCAACGATAAAACTATCAAATTATGGAAGATTACCGAACGAGA
TAAAAGGCCCGAAGGATACAACCTGAAGGATGAAGAGGGGAAACTTAAGGACCTGTCCACGGTGACGTCA
CTGCAGGTGCCAGTGCTGAAGCCCATGGATCTGATGGTGGAGGTGAGCCCTCGGAGGATCTTTGCCAATG
GCCACACCTACCACATCAACTCCATCTCCGTCAACAGTGACTGCGAGACCTACATGTCGGCGGATGACCT
GCGCATCAACCTCTGGCACCTGGCCATCACCGACAGGAGCTTCAACATCGTGGACATCAAGCCGGCCAAC
ATGGAGGACCTTACGGAGGTGATCACAGCATCTGAGTTCCATCCGCACCACTGCAACCTCTTCGTCTACA
GCAGCAGCAAGGGCTCCCTGCGGCTCTGCGACATGCGGGCAGCTGCCCTGTGTGACAAGCATTCCAAGCT
CTTTGAAGAGCCTGAGGACCCCAGTAACCGCTCATTCTTCTCGGAAATCATCTCCTCCGTGTCCGACGTG
AAGTTCAGCCACAGCGGCCGCTACATGCTCACCCGGGACTACCTTACAGTCAAGGTCTGGGACCTGAACA
TGGAGGCAAGACCCATAGAGACCTACCAGGTCCATGACTACCTTCGGAGCAAGCTCTGTTCCCTGTACGA
GAACGACTGCATTTTCGACAAGTTTGAATGTGCCTGGAACGGGAGCGACAGCGTCATCATGACCGGGGCC
TACAACAACTTCTTCCGCATGTTCGATCGGAACACCAAGCGGGACGTGACCCTGGAGGCCTCGAGGGAAA
GCAGCAAGCCCCGGGCTGTGCTCAAGCCACGGCGCGTGTGCGTGGGGGGCAAGCGCCGGCGTGATGACAT
CAGTGTGGACAGCTTGGACTTCACCAAGAAGATCCTGCACACGGCCTGGCACCCGGCTGAGAACATCATT
GCCATCGCCGCCACCAACAACCTGTACATCTTCCAGGACAAGGTAAACTCTGACATGCACTAG

Translation (440 aa):
MREADTLRPPQLMEVSADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNAPHSQGEYDVYSTFQSHE
PEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTS
LQVPVLKPMDLMVEVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPAN
MEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDV
KFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGA
YNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENII
AIAATNNLYIFQDKVNSDMH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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