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Report for CCDS11107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11107.1 Public Homo sapiens 17 ZBTB4 24 110 108 CCDS HistoryNCBI Gene:57659Re-query CCDS DB by CCDS ID:11107.1Re-query CCDS DB by GeneID:57659See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11107.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311403.4 ENSP00000307858.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311403.4Link to Ensembl Protein Viewer:ENSP00000307858.4Re-query CCDS DB by Nucleotide ID:ENST00000311403Re-query CCDS DB by Protein ID:ENSP00000307858
Original member Current member EBI ENST00000380599.9 ENSP00000369973.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380599.9Link to Ensembl Protein Viewer:ENSP00000369973.4Re-query CCDS DB by Nucleotide ID:ENST00000380599Re-query CCDS DB by Protein ID:ENSP00000369973
Original member Current member NCBI NM_001128833.2 NP_001122305.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128833.2Link to Protein Sequence:NP_001122305.1Re-query CCDS DB by Nucleotide ID:NM_001128833Re-query CCDS DB by Protein ID:NP_001122305Link to BLAST:NP_001122305.1
Original member Current member NCBI NM_020899.4 NP_065950.2 Accepted alive Link to Nucleotide Sequence:NM_020899.4Link to Protein Sequence:NP_065950.2Re-query CCDS DB by Nucleotide ID:NM_020899Re-query CCDS DB by Protein ID:NP_065950Link to BLAST:NP_065950.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122305.1 1013 Q9P1Z0 1013 100% 0 0
NP_065950.2 1013 Q9P1Z0 1013 100% 0 0

Chromosomal Locations for CCDS 11107.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7461940 7463890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7465711 7466801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3042 nt):
ATGCCCCCCCCTGCAGAGGTGACGGACCCGTCCCATGCCCCCGCCGTCCTGCGCCAGCTCAATGAACAGC
GGCTCCGTGGCCTCTTCTGTGACGTCACCCTCATAGCCGGAGACACCAAGTTCCCTGCTCACCGCAGCGT
CCTGGCTGCTTCAAGTCCCTTCTTCAGAGAGGCCCTGCTCACTTCAGCCCCACTACCCCTTCCACCAGCT
ACTGGGGGCGCCGCACCCAACCCTGCCACCACCACAGCTGCCTCTTCCTCCTCCTCCTCTTCCTCGTCTT
CTTCCTCTTCTTCCTCCTCTGCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTCCCCCTCCAGCCTCTCC
CCCTGCTTCTTCCCCACCCCGGGTCCTGGAGTTGCCAGGAGTCCCAGCAGCTGCGTTTTCTGATGTCCTC
AACTTCATCTACAGCGCCCGGCTCGCACTGCCTGGTGGTGGAGGGGACGGGGCAGCTGTAGCAGAGATTG
GAGCTTTGGGGCGCCGTCTGGGCATCTCCCGCCTTCAGGGCCTGGGGGAGGGAGGTGATGCCTGGGTACC
TCCTACCCCAGCCCCCATGGCCACCTCGCAGCCTGAAGAGGACAGCTTTGGGCCCGGGCCCAGGCCAGCT
GGGGAGTGGGAGGGTGACAGGGCTGAGGCCCAGGCCCCTGACTTGCAGTGCTCCCTGCCCCGGCGGCCCC
TCCCCTGCCCCCAGTGTGGAAAAAGCTTCATCCATCCCAAACGGCTGCAGACCCATGAGGCCCAGTGCCG
ACGAGGGGCCAGCACGCGGGGGTCTACAGGGCTGGGAGCTGGGGGCGCTGGCCCTGGTGGTCCTGCAGGG
GTGGACGCCTCAGCCCTGCCTCCACCAGTGGGCTTCCGAGGGGGCCCCGAGCACGTGGTGAAGGTGGTGG
GCGGCCACGTGCTGTATGTGTGCGCGGCCTGCGAGCGTTCCTACGTGACCCTGTCCAGTCTGAAGAGACA
CAGCAATGTACACTCGTGGCGGAGGAAGTACCCCTGCCGCTATTGTGAGAAAGTGTTTGCTCTGGCGGAG
TACCGCACGAAGCATGAAGTGTGGCACACGGGGGAGCGCAGGTACCAGTGCATCTTCTGTTGGGAGACCT
TTGTCACTTACTATAACCTGAAGACCCACCAGCGAGCCTTCCACGGCATTAGCCCGGGCCTCCTTGCCAG
TGAGAAGACACCCAATGGAGGCTACAAGCCCAAGCTCAATACACTCAAGCTCTACCGCCTGCTCCCCATG
CGGGCAGCCAAGCGGCCCTACAAGACCTACAGCCAGGGAGCCCCGGAGGCTCCCCTTTCTCCAACCCTCA
ACACACCGGCCCCTGTGGCAATGCCAGCCAGCCCGCCGCCTGGGCCTCCACCTGCCCCAGAGCCTGGCCC
TCCACCCTCTGTCATCACTTTTGCCCACCCAGCCCCCTCTGTCATTGTCCATGGGGGCAGTAGCAGTGGT
GGAGGGGGGAGTGGGACGGCCAGCACAGGAGGGTCCCAAGCTGCCTCGGTTATCACTTACACTGCTCCCC
CGAGGCCACCCAAGAAACGAGAATACCCACCTCCTCCCCCTGAGCCTGCAGCCACACCCACCAGCCCAGC
CACAGCAGTCAGCCCAGCCACCGCTGCAGGGCCAGCCATGGCCACCACCACGGAGGAGGCCAAGGGCCGG
AATCCACGGGCTGGAAGGACTCTGACTTACACAGCCAAGCCAGTGGGCGGGATTGGTGGAGGTGGGGGTC
CCCCCACAGGGGCTGGCCGGGGCCCCTCTCAGCTGCAGGCTCCACCTCCACTGTGTCAGATCACTGTGCG
AATAGGGGAGGAGGCCATCGTCAAGCGCCGCATCTCAGAGACTGACCTGCGTCCTGGGGAGCTGAGCGGA
GAGGAGATGGAGGAGAGTGAGGAGGACGAAGAGGAGGAGGACGAAGAGGAGGAGGAGGAGGATGAGGAGG
AATCAAAGGCTGGTGGGGAGGACCAGCTCTGGAGGCCCTACTACTCCTACAAGCCTAAGCGCAAGGCTGG
AGCTGCTGGAGGTGCCAGTGTGGGGGGCAGTGGGCTGCCCCGAGGCCGCCGGCCACCACGTTGGAGGCAG
AAGCTGGAACGGAGGAGCTGGGAGGAAACCCCAGCGGCCGAGAGCCCAGCGGGACGTGCCCGCACAGAGC
GGAGGCACCGATGCGGGGACTGTGCCCAGACCTTCACCACCCTGAGAAAGCTGCGGAAGCACCAAGAGGC
CCACGGTGGGGGCTCCCACAGCTCCCGGGCCGGACGGAGGCCCTCCACCCGCTTTACCTGCCCCCACTGC
GCCAAGGTGTGCAAGACCGCAGCTGCCCTGAGCCGCCACGGGCAGAGGCATGCTGCTGAGCGGCCCGGGG
GCACCCCAACCCCTGTCATTGCCTATTCCAAGGGCAGCGCTGGCACCAGGCCCGGGGATGTCAAGGAGGA
AGCCCCCCAAGAGATGCAAGTCTCCTCATCCAGCGGTGAGGCAGGTGGCGGGAGCACTGCTGCTGAGGAA
GCTTCCGAGACCGCCTCACTCCAGGACCCTATCATTTCAGGGGGTGAGGAGCCCCCAGTAGTGGCAAGCG
GGGGCAGCTATGTATACCCACCTGTGCAGGAATTTCCACTGGCCTTGATTGGGGGCGGCCGGGAACCTGG
CGGTGGCAGGGGAAAATCTGGGAGTGAAGGGCCAGTGGGGGCTGGTGAGGGGGACCGGATGGAGGGGATA
GGGGCTGCCAAAGTCACTTTCTACCCTGAGCCCTACCCGCTCGTCTATGGCCCCCAGCTCCTTGCCGCCT
ACCCTTACAACTTCAGTAACTTGGCCGCTCTCCCGGTTGCTCTCAACATGGTCCTACCTGATGAGAAGGG
TGCGGGGGCCCTTCCCTTCCTACCAGGGGTCTTTGGCTACGCAGTGAATCCTCAAGCAGCACCCCCTGCC
CCACCAACACCACCTCCCCCAACTCTTCCTCCACCAATTCCCCCTAAGGGAGAAGGGGAAAGGGCAGGGG
TTGAGAGAACCCAGAAGGGCGATGTGGGGTGA

Translation (1013 aa):
MPPPAEVTDPSHAPAVLRQLNEQRLRGLFCDVTLIAGDTKFPAHRSVLAASSPFFREALLTSAPLPLPPA
TGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVL
NFIYSARLALPGGGGDGAAVAEIGALGRRLGISRLQGLGEGGDAWVPPTPAPMATSQPEEDSFGPGPRPA
GEWEGDRAEAQAPDLQCSLPRRPLPCPQCGKSFIHPKRLQTHEAQCRRGASTRGSTGLGAGGAGPGGPAG
VDASALPPPVGFRGGPEHVVKVVGGHVLYVCAACERSYVTLSSLKRHSNVHSWRRKYPCRYCEKVFALAE
YRTKHEVWHTGERRYQCIFCWETFVTYYNLKTHQRAFHGISPGLLASEKTPNGGYKPKLNTLKLYRLLPM
RAAKRPYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAPEPGPPPSVITFAHPAPSVIVHGGSSSG
GGGSGTASTGGSQAASVITYTAPPRPPKKREYPPPPPEPAATPTSPATAVSPATAAGPAMATTTEEAKGR
NPRAGRTLTYTAKPVGGIGGGGGPPTGAGRGPSQLQAPPPLCQITVRIGEEAIVKRRISETDLRPGELSG
EEMEESEEDEEEEDEEEEEEDEEESKAGGEDQLWRPYYSYKPKRKAGAAGGASVGGSGLPRGRRPPRWRQ
KLERRSWEETPAAESPAGRARTERRHRCGDCAQTFTTLRKLRKHQEAHGGGSHSSRAGRRPSTRFTCPHC
AKVCKTAAALSRHGQRHAAERPGGTPTPVIAYSKGSAGTRPGDVKEEAPQEMQVSSSSGEAGGGSTAAEE
ASETASLQDPIISGGEEPPVVASGGSYVYPPVQEFPLALIGGGREPGGGRGKSGSEGPVGAGEGDRMEGI
GAAKVTFYPEPYPLVYGPQLLAAYPYNFSNLAALPVALNMVLPDEKGAGALPFLPGVFGYAVNPQAAPPA
PPTPPPPTLPPPIPPKGEGERAGVERTQKGDVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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