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Report for CCDS82959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82959.1 Public Homo sapiens 4 GYPA 24 110 108 CCDS HistoryNCBI Gene:2993Re-query CCDS DB by CCDS ID:82959.1Re-query CCDS DB by GeneID:2993See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82959.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324022.14 ENSP00000324483.10 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324022.14Link to Ensembl Protein Viewer:ENSP00000324483.10Re-query CCDS DB by Nucleotide ID:ENST00000324022Re-query CCDS DB by Protein ID:ENSP00000324483
Original member Current member NCBI NM_001308190.2 NP_001295119.1 Accepted alive Link to Nucleotide Sequence:NM_001308190.2Link to Protein Sequence:NP_001295119.1Re-query CCDS DB by Nucleotide ID:NM_001308190Re-query CCDS DB by Protein ID:NP_001295119Link to BLAST:NP_001295119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295119.1 117 P02724-3 117 100% 0 0

Chromosomal Locations for CCDS 82959.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 144111394 144111410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144114689 144114767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144116854 144116939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144118714 144118752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144119686 144119781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144140599 144140635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGTATGGAAAAATAATCTTTGTATTACTATTGTCAGATACGCACAAACGGGACACATATGCAGCCACTC
CTAGAGCTCATGAAGTTTCAGAAATTTCTGTTAGAACTGTTTACCCTCCAGAAGAGGAAACCGGAGAAAG
GGTACAACTTGCCCATCATTTCTCTGAACCAGAGATAACACTCATTATTTTTGGGGTGATGGCTGGTGTT
ATTGGAACGATCCTCTTAATTTCTTACGGTATTCGCCGACTGATAAAGAAAAGCCCATCTGATGTAAAAC
CTCTCCCCTCACCTGACACAGACGTGCCTTTAAGTTCTGTTGAAATAGAAAATCCAGAGACAAGTGATCA
ATGA

Translation (117 aa):
MYGKIIFVLLLSDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGV
IGTILLISYGIRRLIKKSPSDVKPLPSPDTDVPLSSVEIENPETSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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