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Report for CCDS5618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5618.1 Public Homo sapiens 7 CLDN12 24 110 108 CCDS HistoryNCBI Gene:9069Re-query CCDS DB by CCDS ID:5618.1Re-query CCDS DB by GeneID:9069See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5618.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287916.8 ENSP00000287916.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000287916.8Link to Ensembl Protein Viewer:ENSP00000287916.4Re-query CCDS DB by Nucleotide ID:ENST00000287916Re-query CCDS DB by Protein ID:ENSP00000287916
Original member Current member EBI ENST00000394605.2 ENSP00000378103.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394605.2Link to Ensembl Protein Viewer:ENSP00000378103.1Re-query CCDS DB by Nucleotide ID:ENST00000394605Re-query CCDS DB by Protein ID:ENSP00000378103
Original member Current member EBI ENST00000496677.6 ENSP00000419053.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000496677.6Link to Ensembl Protein Viewer:ENSP00000419053.1Re-query CCDS DB by Nucleotide ID:ENST00000496677Re-query CCDS DB by Protein ID:ENSP00000419053
Original member Current member NCBI NM_001185072.3 NP_001172001.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001185072.3Link to Protein Sequence:NP_001172001.1Re-query CCDS DB by Nucleotide ID:NM_001185072Re-query CCDS DB by Protein ID:NP_001172001Link to BLAST:NP_001172001.1
Original member Current member NCBI NM_001185073.3 NP_001172002.1 Accepted alive Link to Nucleotide Sequence:NM_001185073.3Link to Protein Sequence:NP_001172002.1Re-query CCDS DB by Nucleotide ID:NM_001185073Re-query CCDS DB by Protein ID:NP_001172002Link to BLAST:NP_001172002.1
Original member Current member NCBI NM_012129.5 NP_036261.1 Accepted alive Link to Nucleotide Sequence:NM_012129.5Link to Protein Sequence:NP_036261.1Re-query CCDS DB by Nucleotide ID:NM_012129Re-query CCDS DB by Protein ID:NP_036261Link to BLAST:NP_036261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172001.1 244 P56749 244 100% 0 0
NP_001172002.1 244 P56749 244 100% 0 0
NP_036261.1 244 P56749 244 100% 0 0

Chromosomal Locations for CCDS 5618.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 90412677 90413411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGGCTGTCGGGATGTCCACGCAGCCACAGTCCTTTCCTTCCTGTGTGGAATCGCCTCAGTAGCAGGCC
TCTTTGCAGGGACTCTGCTTCCCAACTGGAGAAAATTACGATTGATCACATTCAACAGAAACGAGAAGAA
CCTGACTGTTTACACAGGCCTGTGGGTGAAATGTGCCCGGTATGACGGGAGCAGTGACTGCCTGATGTAC
GACACTACTTGGTACTCATCAGTTGACCAGCTGGACCTGCGTGTCCTCCAGTTTGCCCTACCCCTCAGCA
TGCTGATCGCCATGGGTGCCCTGCTGCTCTGCCTGATTGGAATGTGCAACACTGCCTTCAGGTCCTCGGT
GCCCAACATCAAACTGGCCAAGTGTCTGGTCAATAGTGCAGGTTGCCACCTGGTGGCTGGGCTGCTATTT
TTCCTGGCAGGTACTGTGAGCCTCTCCCCATCTATCTGGGTCATCTTTTATAACATCCATCTGAACAAGA
AGTTTGAGCCAGTCTTTTCATTTGACTATGCAGTGTATGTCACTATTGCTAGTGCTGGGGGCCTGTTTAT
GACTTCCCTTATACTATTTATTTGGTATTGTACATGCAAATCTTTGCCTTCTCCTTTCTGGCAACCATTG
TACTCCCATCCACCCAGTATGCATACTTACTCACAGCCCTATTCAGCACGCTCTCGCCTCTCTGCCATTG
AAATTGACATTCCAGTAGTTTCACACACCACTTAA

Translation (244 aa):
MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTVYTGLWVKCARYDGSSDCLMY
DTTWYSSVDQLDLRVLQFALPLSMLIAMGALLLCLIGMCNTAFRSSVPNIKLAKCLVNSAGCHLVAGLLF
FLAGTVSLSPSIWVIFYNIHLNKKFEPVFSFDYAVYVTIASAGGLFMTSLILFIWYCTCKSLPSPFWQPL
YSHPPSMHTYSQPYSARSRLSAIEIDIPVVSHTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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