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Report for CCDS3223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3223.1 Public Homo sapiens 3 KCNMB2 24 110 108 CCDS HistoryNCBI Gene:10242Re-query CCDS DB by CCDS ID:3223.1Re-query CCDS DB by GeneID:10242See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3223.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358316.7 ENSP00000351068.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358316.7Link to Ensembl Protein Viewer:ENSP00000351068.3Re-query CCDS DB by Nucleotide ID:ENST00000358316Re-query CCDS DB by Protein ID:ENSP00000351068
Original member Current member EBI ENST00000452583.6 ENSP00000397483.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452583.6Link to Ensembl Protein Viewer:ENSP00000397483.1Re-query CCDS DB by Nucleotide ID:ENST00000452583Re-query CCDS DB by Protein ID:ENSP00000397483
Original member Current member EBI ENST00000432997.5 ENSP00000407592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432997.5Link to Ensembl Protein Viewer:ENSP00000407592.1Re-query CCDS DB by Nucleotide ID:ENST00000432997Re-query CCDS DB by Protein ID:ENSP00000407592
Original member Current member EBI ENST00000420517.6 ENSP00000408252.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420517.6Link to Ensembl Protein Viewer:ENSP00000408252.2Re-query CCDS DB by Nucleotide ID:ENST00000420517Re-query CCDS DB by Protein ID:ENSP00000408252
Original member Current member EBI ENST00000614557.1 ENSP00000483415.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614557.1Link to Ensembl Protein Viewer:ENSP00000483415.1Re-query CCDS DB by Nucleotide ID:ENST00000614557Re-query CCDS DB by Protein ID:ENSP00000483415
Original member Current member NCBI NM_001278911.2 NP_001265840.1 Accepted alive Link to Nucleotide Sequence:NM_001278911.2Link to Protein Sequence:NP_001265840.1Re-query CCDS DB by Nucleotide ID:NM_001278911Re-query CCDS DB by Protein ID:NP_001265840Link to BLAST:NP_001265840.1
Original member Current member NCBI NM_005832.5 NP_005823.1 Accepted alive Link to Nucleotide Sequence:NM_005832.5Link to Protein Sequence:NP_005823.1Re-query CCDS DB by Nucleotide ID:NM_005832Re-query CCDS DB by Protein ID:NP_005823Link to BLAST:NP_005823.1
Original member Current member NCBI NM_181361.3 NP_852006.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181361.3Link to Protein Sequence:NP_852006.1Re-query CCDS DB by Nucleotide ID:NM_181361Re-query CCDS DB by Protein ID:NP_852006Link to BLAST:NP_852006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265840.1 235 Q9Y691 235 100% 0 0
NP_005823.1 235 Q9Y691 235 100% 0 0
NP_852006.1 235 Q9Y691 235 100% 0 0

Chromosomal Locations for CCDS 3223.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 178807410 178807465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 178825588 178825758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 178828178 178828373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 178842653 178842937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGTTTATATGGACCAGTGGCCGGACCTCTTCATCTTATAGACATGATGAAAAAAGAAATATTTACCAGA
AAATCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACAGCACTGAAGGCAGGAGAGGACCGAGC
TATTCTCCTGGGACTGGCTATGATGGTGTGCTCCATCATGATGTATTTTCTGCTGGGAATCACACTCCTG
CGCTCATACATGCAGAGCGTGTGGACCGAAGAGTCTCAATGCACCTTGCTGAATGCGTCCATCACGGAAA
CATTTAATTGCTCCTTCAGCTGTGGTCCAGACTGCTGGAAACTTTCTCAGTACCCCTGCCTCCAGGTGTA
CGTTAACCTGACTTCTTCCGGGGAAAAGCTCCTCCTCTACCACACAGAAGAGACAATAAAAATCAATCAG
AAGTGCTCCTATATACCTAAATGTGGAAAAAATTTTGAAGAATCCATGTCCCTGGTGAATGTTGTCATGG
AAAACTTCAGGAAGTATCAACACTTCTCCTGCTATTCTGACCCAGAAGGAAACCAGAAGAGTGTTATCCT
AACAAAACTCTACAGTTCCAACGTGCTGTTCCATTCACTCTTCTGGCCAACCTGTATGATGGCTGGGGGT
GTGGCAATTGTTGCCATGGTGAAACTTACACAGTACCTCTCCCTACTATGTGAGAGGATCCAACGGATCA
ATAGATAA

Translation (235 aa):
MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYFLLGITLL
RSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQ
KCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGG
VAIVAMVKLTQYLSLLCERIQRINR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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