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Report for CCDS35723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35723.1 Public Mus musculus 1 Lad1 23 108 98 CCDS HistoryNCBI Gene:16763Re-query CCDS DB by CCDS ID:35723.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038760.9 ENSMUSP00000044630.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038760.9Link to Ensembl Protein Viewer:ENSMUSP00000044630.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038760Re-query CCDS DB by Protein ID:ENSMUSP00000044630
Original member Current member NCBI NM_133664.3 NP_598425.2 Accepted alive Link to Nucleotide Sequence:NM_133664.3Link to Protein Sequence:NP_598425.2Re-query CCDS DB by Nucleotide ID:NM_133664Re-query CCDS DB by Protein ID:NP_598425Link to BLAST:NP_598425.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598425.2 528 P57016 528 100% 0 0

Chromosomal Locations for CCDS 35723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 135818979 135819016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135825755 135825892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135827164 135828046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135828715 135828819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135829689 135829732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135830900 135830972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135831083 135831220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135831525 135831611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135831874 135831948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135832312 135832317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGTCGGTCAGCAGAAAGGACTGGTCCGCGCTGTCCAGCCTTGCCCGACAGCGGACTTTGGAGGACGAAG
AGGAGCAGGAGCGGGAACGCAGGCGGAGGCACCGCAACCTGAGTTCAACCACAGATGATGAATCTCCAAA
ACTCACCCAGAATGGAGCTCAGAGATCTGTGGAGAGGCTGCCCAGTGTGGAGGAAGCAGAGGTCTCTAAG
CCATCGCCCCCAGCCTCCAAAGATGAAGATGAAGACTTCCAGGCCATCCTTAGGACCAGAAAGGAGCGGA
GACAGAGGCGGCAGGTGGTAGAGGCTGTCCAGGCTCCAGTACAGGAGAGGCCAGAGGCAGAGGAGGAAAG
AGACAGCCTGGGCCCTGAGCAGACCTCGTCACAGCCCCTTGTGCCTAAGAAGAAAGTGGAGGCCCTGCCT
CGCCGGAGACTGAGTCGGGAGCAGAGAGGCCCTTGGGCCCAGGACGAAGAACGCCTAAAGAACAGAGAGC
TTGCGGAAGGAGAAAAGAGGCTTCCAGAAGAGACGGTGGCTCAGCAGAAGACCTTGGTCTCTGAGAAAAC
GCCTGTCTCAGAGAAGACCCCAGTGCCTGCCAAAAGACTGGTTTCTGAGAAAGCCTGCCCCTCAGAGAAG
GGGACAGCCACAGAGAAAGCGTCTCTGACTGAGAAAAGACATAGCCCAGAGAAGTTGGTTCCAGAAAAAA
CAAGTGTGACAGAGAAGTCACCGGTCCCTGAGAAGACGCTTGTGTCTCTGAAGACGGCAGCACCAGAGAG
AAGGTCCCCTCCAGTTCTAGAAAAAGCCATCGTCTCAGAGAAGATGCAGGAGAGGAAGCTGGTGTCGGAG
AAAGCATCCATCTTTGAGAAGTCACTAGTCTCAGAGGCAAAGCTGACGCCAAAGAAGGCAGCAGTGTCAG
AGCAGCCCCAGACCACTGGGGGAAGCCAGGCCACCACGAGGGAGCCCAGAGGAAGGGCCCTCCCTGACAA
GAGCCCACCTTCTTCTGCAGAGCAGAGCACACCAGCCCCGCCGACCAAAGCCTCTCGTTTCCCACCCATC
ACACTCCAGGTGAAAATTCCCAGCAAGGATGAAGATGCAGACACACCTTCACCCACCCTGCTCACCTACA
GCAGTTCCCTCAAACGCTCCAGCCCCAGGACCATCTCCTTCCGGATGAGCCCCAGGAAAGACAACTCAGA
AACACCCTTAACCCGCAGTGCCAGCGTGAGGCTGCCGGCTAGCACCGTCAAGCTAGGGGAGAAACTGGAG
AGATACCACACAGCCATCCAGAGGTCAGAATCCGTCAGGTCTCCAGGCTCCTCCCGTACTGAAGTCCTTG
TCACACCTGCCGGTGTAGCCAGCAAGCGACACCTCTTTGAGAAGGAGCTGTCAGGCCAGAACCGCACAGA
ACCAACCTCCATCCGAAAGGAGAATCTGCGTCTGTCAGGGGTCGTGACATCAAGACTTAACCTGTGGATC
AGCAAGACCCAGGATTCGGGAGACCACGGTTCTCAGGAGGTACGGAAAGAGGCATCAGTCACCAAGAGGG
CTCAATGGGGAAGCAAGCCGTCCACATCCCTGGATGCAGAGGTGTGA

Translation (528 aa):
MSVSRKDWSALSSLARQRTLEDEEEQERERRRRHRNLSSTTDDESPKLTQNGAQRSVERLPSVEEAEVSK
PSPPASKDEDEDFQAILRTRKERRQRRQVVEAVQAPVQERPEAEEERDSLGPEQTSSQPLVPKKKVEALP
RRRLSREQRGPWAQDEERLKNRELAEGEKRLPEETVAQQKTLVSEKTPVSEKTPVPAKRLVSEKACPSEK
GTATEKASLTEKRHSPEKLVPEKTSVTEKSPVPEKTLVSLKTAAPERRSPPVLEKAIVSEKMQERKLVSE
KASIFEKSLVSEAKLTPKKAAVSEQPQTTGGSQATTREPRGRALPDKSPPSSAEQSTPAPPTKASRFPPI
TLQVKIPSKDEDADTPSPTLLTYSSSLKRSSPRTISFRMSPRKDNSETPLTRSASVRLPASTVKLGEKLE
RYHTAIQRSESVRSPGSSRTEVLVTPAGVASKRHLFEKELSGQNRTEPTSIRKENLRLSGVVTSRLNLWI
SKTQDSGDHGSQEVRKEASVTKRAQWGSKPSTSLDAEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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