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Report for CCDS76798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76798.1 Public Homo sapiens 16 CIAO3 24 110 108 CCDS HistoryNCBI Gene:64428Re-query CCDS DB by CCDS ID:76798.1Re-query CCDS DB by GeneID:64428See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540986.5 ENSP00000444008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540986.5Link to Ensembl Protein Viewer:ENSP00000444008.1Re-query CCDS DB by Nucleotide ID:ENST00000540986Re-query CCDS DB by Protein ID:ENSP00000444008
Original member Current member EBI ENST00000568545.5 ENSP00000457058.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568545.5Link to Ensembl Protein Viewer:ENSP00000457058.1Re-query CCDS DB by Nucleotide ID:ENST00000568545Re-query CCDS DB by Protein ID:ENSP00000457058
Original member Current member NCBI NM_001304799.2 NP_001291728.1 Accepted alive Link to Nucleotide Sequence:NM_001304799.2Link to Protein Sequence:NP_001291728.1Re-query CCDS DB by Nucleotide ID:NM_001304799Re-query CCDS DB by Protein ID:NP_001291728Link to BLAST:NP_001291728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291728.1 374 Q9H6Q4-3 374 100% 0 0

Chromosomal Locations for CCDS 76798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 730417 730655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 730843 731000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 731565 731702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 732301 732373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 733298 733427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 734229 734347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 734737 734871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 736266 736398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGCGGCACCCAGTCAGCAGAGGCTGGTTGTAGTTTCGGTCTCACCACAGTCTAGAGCATCGCTGGCTG
CACGGTTTCAGCTGAATCCTACAGATACTGCCAGGAAATTAACCTCATTCTTTAAAAAAATAGGGGTGCA
CTTCGTCTTCGACACCGCCTTCTCAAGGCACTTCAGCCTCCTGGAGAGCCAGCGAGAGTTTGTGCGGCGA
TTCCGAGGACAGGCCGACTGCAGACAGGCGCTGCCCCTGCTGGCCTCTGCCTGCCCAGGCTGGATCTGCT
ATGCCGAGAAGACTCACGGCAGCTTCATCCTCCCCCACATCAGCACCGCCCGGTCCCCGCAGCAGGTCAT
GGGCTCCCTGGTCAAGGACTTCTTCGCCCAGCAGCAGCACTTGACCCCTGACAAGATCTACCACGTCACA
GTGATGCCCTGCTATGACAAAAAGCTGGAAGCCTCCAGACCCGACTTTTTCAACCAGGAGCACCAGACAC
GGGATGTGGACTGTGTCCTCACAACAGGAGAAGTTTTCAGGTTGCTGGAGGAAGAGGGCGTCTCCCTCCC
CGACCTGGAACCAGCCCCTCTGGACAGCCTGTGCAGCGGTGCCTCTGCAGAGGAGCCCACCAGCCATCGG
GGAGGGGGCTCGGGGGGCTACCTGGAGCACGTGTTCCGGCACGCGGCCCGAGAGCTCTTTGGAATCCATG
TGGCTGAGGTTACCTACAAACCCCTGAGGAACAAAGACTTCCAGGAGGTGACACTGGAGAAGGAGGGCCA
GGTGCTGCTGCACTTCGCAATGGCGTACGGCTTCCGCAACATCCAGAACCTGGTGCAGAGGCTCAAACGA
GGGCGCTGCCCCTACCACTACGTGGAGGTCATGGCCTGCCCCTCAGGCTGCCTGAACGGCGGGGGCCAGC
TCCAGGCCCCAGACAGGCCCAGCAGAGAGCTCCTCCAGCACGTGGAGAGACTGTACGGCATGGTCCGGGC
TGAGGCGCCCGAGGACGCGCCTGGGGTTCAGGAGCTGTACACACACTGGCTGCAGGGCACGGACTCGGAG
TGTGCAGGTCGCTTGCTGCATACGCAGTACCACGCCGTGGAGAAGGCCAGCACTGGCCTGGGCATCCGGT
GGTAG

Translation (374 aa):
MAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRR
FRGQADCRQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVT
VMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHR
GGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKR
GRCPYHYVEVMACPSGCLNGGGQLQAPDRPSRELLQHVERLYGMVRAEAPEDAPGVQELYTHWLQGTDSE
CAGRLLHTQYHAVEKASTGLGIRW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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