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Report for CCDS46713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46713.1 Public Homo sapiens 22 TNRC6B 24 110 108 CCDS HistoryNCBI Gene:23112Re-query CCDS DB by CCDS ID:46713.1Re-query CCDS DB by GeneID:23112See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335727.13 ENSP00000338371.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335727.13Link to Ensembl Protein Viewer:ENSP00000338371.8Re-query CCDS DB by Nucleotide ID:ENST00000335727Re-query CCDS DB by Protein ID:ENSP00000338371
Original member Current member NCBI NM_015088.3 NP_055903.2 Accepted alive Link to Nucleotide Sequence:NM_015088.3Link to Protein Sequence:NP_055903.2Re-query CCDS DB by Nucleotide ID:NM_015088Re-query CCDS DB by Protein ID:NP_055903Link to BLAST:NP_055903.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055903.2 1723 Q9UPQ9-1 1723 100% 0 0

Chromosomal Locations for CCDS 46713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 40178136 40178140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40246015 40246102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40251179 40251200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40261832 40262173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40264688 40267036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40273425 40273600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40277077 40277151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40277999 40278044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40279995 40280143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40285645 40285770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40300455 40300586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40300910 40301005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40301150 40301333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40308512 40308649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40310817 40310993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40312505 40312651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40312902 40312997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40315283 40315507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40315942 40316012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40321090 40321229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40322854 40323241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5172 nt):
ATGAGAGAGAAGGAGCAAGAAAGGGAAGAACAGTTAATGGAAGACAAGAAAAGGAAGAAAGAGGATAAAA
AGAAAAAAGAAGCCACTCAGAAGGTCACGGAACAAAAAACCAAAGTGCCCGAAGTGACGAAACCAAGTTT
AAGCCAACCAACGGCCGCCAGCCCAATTGGCAGCTCTCCATCGCCACCAGTCAATGGTGGCAACAATGCC
AAAAGGGTGGCAGTGCCGAACGGACAACCGCCAAGCGCCGCCCGCTACATGCCTCGGGAGGTGCCGCCGC
GATTCCGTTGCCAGCAGGACCACAAAGTGTTACTAAAACGTGGGCAGCCCCCTCCACCGTCCTGCATGCT
CCTTGGGGGTGGGGCAGGGCCTCCTCCCTGCACAGCACCTGGAGCAAACCCAAACAACGCACAAGTGACA
GGAGCGCTGCTGCAGAGTGAGAGTGGGACTGCGCCAGACTCAACCCTTGGAGGTGCTGCTGCTTCAAATT
ATGCAAATTCCACTTGGGGCTCGGGAGCCTCCTCCAACAACGGCACCTCCCCCAACCCAATTCACATCTG
GGACAAGGTGATTGTAGACGGGTCTGACATGGAAGAGTGGCCTTGTATTGCCAGCAAAGACACTGAATCT
TCTTCCGAAAACACCACCGATAACAACAGTGCCTCGAACCCTGGCTCTGAGAAGAGCACTCTGCCAGGAA
GCACCACTAGTAACAAAGGAAAAGGGAGCCAGTGCCAGTCTGCAAGTTCTGGGAACGAATGTAATCTTGG
GGTCTGGAAATCTGACCCTAAGGCTAAATCTGTTCAATCTTCCAACTCTACTACAGAGAACAACAATGGA
CTAGGAAATTGGAGGAATGTGAGTGGTCAGGATAGAATTGGACCTGGCTCTGGCTTCAGCAACTTTAACC
CAAATAGCAACCCATCTGCCTGGCCAGCACTGGTCCAAGAAGGAACTTCTAGGAAAGGGGCATTGGAAAC
AGATAATAGTAATTCCAGTGCACAGGTTAGCACAGTAGGTCAGACATCCAGGGAACAGCAGTCAAAGATG
GAAAATGCGGGTGTTAATTTTGTTGTCTCTGGCAGAGAACAGGCTCAAATTCATAACACTGATGGACCAA
AAAATGGAAACACTAACTCCTTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGGAATGCCCTTTGG
AATGGGCTTGGGGAACACCTCCAGGAGCACTGATGCCCCTTCACAAAGCACTGGAGATCGAAAGACTGGG
AGTGTTGGATCTTGGGGTGCAGCTAGGGGGCCTTCTGGAACTGACACAGTCTCTGGACAAAGCAATTCTG
GAAACAATGGGAACAATGGAAAAGAGAGAGAGGACTCCTGGAAAGGAGCTTCTGTTCAGAAATCAACTGG
GTCAAAAAATGACTCTTGGGACAACAATAACAGGTCTACGGGTGGGTCCTGGAACTTTGGCCCCCAGGAC
TCTAATGACAACAAATGGGGTGAAGGGAACAAAATGACATCTGGGGTCTCTCAGGGAGAATGGAAACAGC
CGACTGGGTCTGATGAGTTGAAAATTGGAGAATGGAGTGGTCCAAACCAACCAAATTCTAGCACTGGAGC
ATGGGACAATCAAAAGGGCCACCCCCTCCCTGAAAACCAAGGCAATGCCCAGGCTCCCTGTTGGGGAAGA
TCTTCCAGCTCCACAGGAAGTGAAGTTGGAGGTCAAAGCACTGGAAGCAACCACAAAGCAGGAAGTAGTG
ACAGTCATAACTCTGGCCGTCGGTCGTACAGGCCCACACATCCTGATTGTCAGGCTGTCTTGCAGACTCT
TTTGAGCCGAACTGATTTGGACCCCAGGGTGCTCTCAAACACTGGCTGGGGCCAAACTCAAATTAAGCAG
GACACAGTGTGGGACATTGAAGAGGTGCCAAGGCCTGAGGGGAAATCTGACAAAGGAACTGAGGGGTGGG
AGAGCGCTGCCACACAGACCAAGAACTCAGGGGGCTGGGGAGATGCACCCAGCCAAAGCAATCAAATGAA
GTCTGGATGGGGGGAGCTCTCAGCCTCTACAGAGTGGAAAGACCCCAAGAACACAGGAGGCTGGAATGAC
TACAAGAACAACAACTCTTCCAACTGGGGAGGAGGACGACCTGATGAAAAGACACCTTCCTCTTGGAATG
AGAATCCCAGCAAGGATCAGGGGTGGGGAGGTGGACGCCAGCCCAATCAAGGATGGTCTTCTGGAAAGAA
TGGTTGGGGGGAGGAAGTCGATCAGACAAAAAACAGCAATTGGGAAAGTTCTGCAAGTAAACCTGTGTCT
GGGTGGGGTGAAGGAGGGCAGAATGAAATCGGGACTTGGGGTAATGGTGGCAATGCAAGCCTAGCTTCAA
AAGGTGGGTGGGAGGATTGCAAAAGATCCCCAGCATGGAATGAGACGGGCCGACAGCCCAATTCCTGGAA
TAAACAACACCAACAGCAGCAGCCCCCACAGCAGCCGCCGCCACCACAACCAGAGGCTTCTGGTTCGTGG
GGAGGCCCACCCCCACCACCTCCAGGCAACGTTCGACCTTCCAATTCCAGCTGGAGCAGCGGGCCACAGC
CTGCAACACCTAAGGATGAGGAACCCAGTGGTTGGGAAGAGCCATCCCCACAGTCAATTAGTCGGAAAAT
GGACATTGATGATGGCACTTCAGCATGGGGAGACCCTAACAGTTATAACTACAAGAATGTGAATCTGTGG
GATAAGAATTCCCAAGGGGGCCCAGCACCTCGAGAACCAAACCTGCCCACCCCAATGACCAGTAAATCGG
CATCAGATTCCAAATCTATGCAAGACGGCTGGGGGGAGAGTGACGGGCCAGTCACAGGAGCTCGCCATCC
CAGCTGGGAAGAGGAGGAGGATGGAGGAGTCTGGAACACCACTGGCTCTCAGGGCAGTGCTTCCTCCCAC
AACTCAGCAAGCTGGGGACAAGGAGGAAAGAAACAAATGAAGTGCTCACTCAAAGGAGGAAACAATGATT
CATGGATGAATCCTCTTGCCAAACAGTTTTCAAATATGGGATTGCTGAGTCAGACTGAAGATAATCCAAG
CAGCAAAATGGATTTGTCTGTAGGAAGCCTTTCAGATAAAAAATTTGATGTGGACAAGCGAGCGATGAAT
CTCGGGGATTTTAATGATATCATGAGGAAGGATCGATCTGGGTTCCGTCCACCTAATTCCAAAGACATGG
GAACCACAGATAGTGGGCCTTATTTTGAGAAGGGCGGTAGTCATGGTTTGTTTGGAAACAGCACAGCACA
ATCGAGAGGTCTGCACACACCCGTGCAGCCACTAAATTCTTCTCCCAGTCTCCGGGCGCAAGTGCCTCCC
CAGTTTATTTCCCCCCAGGTTTCTGCCTCAATGCTCAAGCAGTTTCCCAACAGTGGCCTGAGTCCAGGTC
TTTTCAATGTGGGGCCCCAGTTATCTCCTCAACAAATTGCCATGCTGAGCCAGCTTCCACAAATTCCCCA
GTTTCAGTTGGCATGTCAGCTTCTCTTGCAGCAGCAGCAACAGCAGCAGTTGTTACAGAACCAGAGAAAG
ATTTCTCAAGCTGTACGCCAACAGCAAGAGCAGCAGCTGGCTCGAATGGTGAGTGCACTGCAGCAGCAGC
AGCAGCAGCAGCAGAGGCAGCCAGGCATGAAGCACTCGCCCTCTCATCCTGTTGGGCCCAAGCCGCATCT
GGACAACATGGTACCCAACGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGGCCAATACCTGGA
TATGGTTCTGGCTTCAGCTCTGGCGGCATGGACTATGGCATGGTTGGTGGGAAGGAGGCTGGAACCGAGT
CTCGCTTTAAACAGTGGACCTCCATGATGGAGGGGCTGCCCTCTGTAGCCACACAGGAAGCCAATATGCA
CAAAAATGGCGCTATAGTGGCCCCTGGTAAAACCCGGGGAGGGTCACCGTACAACCAGTTTGATATCATC
CCTGGTGACACACTGGGTGGCCATACGGGTCCTGCTGGTGATAGCTGGTTACCTGCCAAATCTCCACCAA
CAAATAAAATCGGAAGTAAATCCAGCAATGCCAGTTGGCCTCCAGAATTCCAACCAGGAGTGCCATGGAA
AGGTATCCAAAACATTGACCCTGAATCTGACCCCTATGTCACCCCAGGAAGTGTGCTGGGGGGTACAGCC
ACATCTCCCATTGTAGATACTGACCACCAACTGCTGCGGGATAACACCACAGGGTCTAATTCTTCCCTCA
ACACCTCGCTGCCTTCACCTGGTGCCTGGCCCTACAGTGCCTCTGACAACTCCTTTACCAACGTTCATAG
CACTTCAGCAAAGTTCCCTGATTACAAATCAACATGGTCCCCAGATCCCATAGGACACAACCCCACTCAT
CTCTCCAACAAGATGTGGAAAAACCATATTTCCTCCAGGAACACTACACCGCTGCCCCGCCCACCTCCTG
GTCTGACCAACCCCAAACCATCATCTCCCTGGAGCAGCACAGCACCCCGATCAGTCAGGGGGTGGGGGAC
ACAGGACTCACGGCTCGCCTCGGCCTCTACCTGGAGTGATGGTGGCTCAGTTCGTCCTAGTTACTGGCTG
GTTCTTCACAATCTCACCCCACAGATTGATGGGTCAACCTTGAGAACGATCTGCATGCAGCATGGCCCAC
TGCTGACATTCCATCTGAATCTAACCCAGGGCACTGCCCTGATCCGATACAGCACCAAACAGGAGGCGGC
CAAGGCCCAAACTGCACTGCACATGTGTGTGTTGGGAAACACTACCATCCTTGCTGAGTTTGCCACTGAT
GATGAAGTCAGCCGCTTTCTGGCACAAGCTCAGCCCCCTACACCTGCAGCAACCCCAAGTGCGCCAGCTG
CGGGGTGGCAGTCGCTGGAGACCGGCCAGAACCAGTCAGATCCCGTGGGACCTGCTCTGAATCTTTTTGG
TGGGTCCACTGGGCTCGGGCAGTGGAGCAGCAGCGCTGGTGGCAGCAGCGGGGCCGATCTTGCTGGCGCT
TCATTGTGGGGGCCCCCAAACTATTCTTCTAGCTTATGGGGAGTCCCAACGGTGGAAGATCCCCATAGGA
TGGGCAGCCCTGCTCCTTTACTACCTGGTGACCTTCTGGGAGGAGGGTCGGATTCAATCTGA

Translation (1723 aa):
MREKEQEREEQLMEDKKRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNA
KRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNAQVT
GALLQSESGTAPDSTLGGAAASNYANSTWGSGASSNNGTSPNPIHIWDKVIVDGSDMEEWPCIASKDTES
SSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQSASSGNECNLGVWKSDPKAKSVQSSNSTTENNNG
LGNWRNVSGQDRIGPGSGFSNFNPNSNPSAWPALVQEGTSRKGALETDNSNSSAQVSTVGQTSREQQSKM
ENAGVNFVVSGREQAQIHNTDGPKNGNTNSLNLSSPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTG
SVGSWGAARGPSGTDTVSGQSNSGNNGNNGKEREDSWKGASVQKSTGSKNDSWDNNNRSTGGSWNFGPQD
SNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGR
SSSSTGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQ
DTVWDIEEVPRPEGKSDKGTEGWESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWND
YKNNNSSNWGGGRPDEKTPSSWNENPSKDQGWGGGRQPNQGWSSGKNGWGEEVDQTKNSNWESSASKPVS
GWGEGGQNEIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGSW
GGPPPPPPGNVRPSNSSWSSGPQPATPKDEEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLW
DKNSQGGPAPREPNLPTPMTSKSASDSKSMQDGWGESDGPVTGARHPSWEEEEDGGVWNTTGSQGSASSH
NSASWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVGSLSDKKFDVDKRAMN
LGDFNDIMRKDRSGFRPPNSKDMGTTDSGPYFEKGGSHGLFGNSTAQSRGLHTPVQPLNSSPSLRAQVPP
QFISPQVSASMLKQFPNSGLSPGLFNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQQQQQQQLLQNQRK
ISQAVRQQQEQQLARMVSALQQQQQQQQRQPGMKHSPSHPVGPKPHLDNMVPNALNVGLPDLQTKGPIPG
YGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMMEGLPSVATQEANMHKNGAIVAPGKTRGGSPYNQFDII
PGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTA
TSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNPTH
LSNKMWKNHISSRNTTPLPRPPPGLTNPKPSSPWSSTAPRSVRGWGTQDSRLASASTWSDGGSVRPSYWL
VLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATD
DEVSRFLAQAQPPTPAATPSAPAAGWQSLETGQNQSDPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGA
SLWGPPNYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGSDSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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