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Report for CCDS11771.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11771.2 Public Homo sapiens 17 SLC26A11 24 110 108 CCDS HistoryNCBI Gene:284129Re-query CCDS DB by CCDS ID:11771.2Re-query CCDS DB by GeneID:284129See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11771.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361193.8 ENSP00000355384.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361193.8Link to Ensembl Protein Viewer:ENSP00000355384.3Re-query CCDS DB by Nucleotide ID:ENST00000361193Re-query CCDS DB by Protein ID:ENSP00000355384
Original member Current member EBI ENST00000411502.7 ENSP00000403998.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411502.7Link to Ensembl Protein Viewer:ENSP00000403998.3Re-query CCDS DB by Nucleotide ID:ENST00000411502Re-query CCDS DB by Protein ID:ENSP00000403998
Original member Current member EBI ENST00000546047.6 ENSP00000440724.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546047.6Link to Ensembl Protein Viewer:ENSP00000440724.2Re-query CCDS DB by Nucleotide ID:ENST00000546047Re-query CCDS DB by Protein ID:ENSP00000440724
Original member Current member EBI ENST00000572725.5 ENSP00000459470.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572725.5Link to Ensembl Protein Viewer:ENSP00000459470.1Re-query CCDS DB by Nucleotide ID:ENST00000572725Re-query CCDS DB by Protein ID:ENSP00000459470
Original member Current member NCBI NM_001166347.2 NP_001159819.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166347.2Link to Protein Sequence:NP_001159819.1Re-query CCDS DB by Nucleotide ID:NM_001166347Re-query CCDS DB by Protein ID:NP_001159819Link to BLAST:NP_001159819.1
Original member Current member NCBI NM_001166348.2 NP_001159820.1 Accepted alive Link to Nucleotide Sequence:NM_001166348.2Link to Protein Sequence:NP_001159820.1Re-query CCDS DB by Nucleotide ID:NM_001166348Re-query CCDS DB by Protein ID:NP_001159820Link to BLAST:NP_001159820.1
Original member Current member NCBI NM_001166349.2 NP_001159821.1 Accepted alive Link to Nucleotide Sequence:NM_001166349.2Link to Protein Sequence:NP_001159821.1Re-query CCDS DB by Nucleotide ID:NM_001166349Re-query CCDS DB by Protein ID:NP_001159821Link to BLAST:NP_001159821.1
Original member Current member NCBI NM_173626.4 NP_775897.3 Accepted alive Link to Nucleotide Sequence:NM_173626.4Link to Protein Sequence:NP_775897.3Re-query CCDS DB by Nucleotide ID:NM_173626Re-query CCDS DB by Protein ID:NP_775897Link to BLAST:NP_775897.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159819.1 606 Q86WA9 606 100% 0 0
NP_001159820.1 606 Q86WA9 606 100% 0 0
NP_001159821.1 606 Q86WA9 606 100% 0 0
NP_775897.3 606 Q86WA9 606 100% 0 0

Chromosomal Locations for CCDS 11771.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 80221561 80221794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80222655 80222847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80223252 80223337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80225837 80225916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80227818 80227960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80236928 80237103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80237522 80237594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80241771 80241821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80245196 80245256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80246154 80246209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80246509 80246649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80248130 80248257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80248575 80248674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80249154 80249287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80251329 80251401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80252625 80252716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGCCTTCTTCGGTGACGGCGCTGGGTCAGGCCAGGTCCTCTGGCCCCGGGATGGCCCCGAGCGCCTGCT
GCTGCTCCCCTGCGGCCCTGCAGAGGAGGCTGCCCATCCTGGCGTGGCTGCCCAGCTACTCCCTGCAGTG
GCTGAAGATGGATTTCGTCGCCGGCCTCTCAGTTGGCCTCACTGCCATTCCCCAGGCGCTGGCCTATGCT
GAAGTGGCTGGACTCCCGCCCCAGTATGGCCTCTACTCTGCCTTCATGGGCTGCTTCGTGTATTTCTTCC
TGGGCACCTCCCGGGATGTGACTCTGGGCCCCACCGCCATTATGTCCCTCCTGGTCTCCTTCTACACCTT
CCATGAGCCCGCCTACGCTGTGCTGCTGGCCTTCCTGTCCGGCTGCATCCAGCTGGCCATGGGGGTCCTG
CGTTTGGGGTTCCTGCTGGACTTCATTTCCTACCCCGTCATTAAAGGCTTCACCTCTGCTGCTGCCGTCA
CCATCGGCTTTGGACAGATCAAGAACCTGCTGGGACTACAGAACATCCCCAGGCCGTTCTTCCTGCAGGT
GTACCACACCTTCCTCAGGATTGCAGAGACCAGGGTAGGTGACGCCGTCCTGGGGCTGGTCTGCATGCTG
CTGCTGCTGGTGCTGAAGCTGATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCCCTGGTGTGC
GGCTCAGCCGTGGGCTGGTCTGGGCTGCCACGACAGCTCGCAACGCCCTGGTGGTCTCCTTCGCAGCCCT
GGTTGCGTACTCCTTCGAGGTGACTGGATACCAGCCTTTCATCCTAACAGGGGAGACAGCTGAGGGGCTC
CCTCCAGTCCGGATCCCGCCCTTCTCAGTGACCACAGCCAACGGGACGATCTCCTTCACCGAGATGGTGC
AGGACATGGGAGCCGGGCTGGCCGTGGTGCCCCTGATGGGCCTCCTGGAGAGCATTGCGGTGGCCAAAGC
CTTCGCATCTCAGAATAATTACCGCATCGATGCCAACCAGGAGCTGCTGGCCATCGGTCTCACCAACATG
TTGGGCTCCCTCGTCTCCTCCTACCCGGTCACAGGCAGCTTTGGACGGACAGCCGTGAACGCTCAGTCGG
GGGTGTGCACCCCGGCGGGGGGCCTGGTGACGGGAGTGCTGGTGCTGCTGTCTCTGGACTACCTGACCTC
ACTGTTCTACTACATCCCCAAGTCTGCCCTGGCTGCCGTCATCATCATGGCCGTGGCCCCGCTGTTCGAC
ACCAAGATCTTCAGGACGCTCTGGCGTGTTAAGAGGCTGGACCTGCTGCCCCTGTGCGTGACCTTCCTGC
TGTGCTTCTGGGAGGTGCAGTACGGCATCCTGGCCGGGGCCCTGGTGTCTCTGCTCATGCTCCTGCACTC
TGCAGCCAGGCCTGAGACCAAGGTGTCAGAGGGGCCGGTTCTGGTCCTGCAGCCGGCCAGCGGCCTGTCC
TTCCCTGCCATGGAGGCTCTGCGGGAGGAGATCCTAAGCCGGGCCCTGGAAGTGTCCCCGCCACGCTGCC
TGGTCCTGGAGTGCACCCATGTCTGCAGCATCGACTACACTGTGGTGCTGGGACTCGGCGAGCTCCTCCA
GGACTTCCAGAAGCAGGGCGTCGCCCTGGCCTTTGTGGGCCTGCAGGTCCCCGTTCTCCGTGTCCTGCTG
TCCGCTGACCTGAAGGGGTTCCAGTACTTCTCTACCCTGGAAGAAGCAGAGAAGCACCTGAGGCAGGAGC
CAGGGACCCAGCCCTACAACATCAGAGAAGACTCCATTCTGGACCAAAAGGTTGCCCTGCTCAAGGCATA
A

Translation (606 aa):
MPSSVTALGQARSSGPGMAPSACCCSPAALQRRLPILAWLPSYSLQWLKMDFVAGLSVGLTAIPQALAYA
EVAGLPPQYGLYSAFMGCFVYFFLGTSRDVTLGPTAIMSLLVSFYTFHEPAYAVLLAFLSGCIQLAMGVL
RLGFLLDFISYPVIKGFTSAAAVTIGFGQIKNLLGLQNIPRPFFLQVYHTFLRIAETRVGDAVLGLVCML
LLLVLKLMRDHVPPVHPEMPPGVRLSRGLVWAATTARNALVVSFAALVAYSFEVTGYQPFILTGETAEGL
PPVRIPPFSVTTANGTISFTEMVQDMGAGLAVVPLMGLLESIAVAKAFASQNNYRIDANQELLAIGLTNM
LGSLVSSYPVTGSFGRTAVNAQSGVCTPAGGLVTGVLVLLSLDYLTSLFYYIPKSALAAVIIMAVAPLFD
TKIFRTLWRVKRLDLLPLCVTFLLCFWEVQYGILAGALVSLLMLLHSAARPETKVSEGPVLVLQPASGLS
FPAMEALREEILSRALEVSPPRCLVLECTHVCSIDYTVVLGLGELLQDFQKQGVALAFVGLQVPVLRVLL
SADLKGFQYFSTLEEAEKHLRQEPGTQPYNIREDSILDQKVALLKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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