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Report for CCDS60000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60000.1 Public Homo sapiens 1 SZRD1 24 110 108 CCDS HistoryNCBI Gene:26099Re-query CCDS DB by CCDS ID:60000.1Re-query CCDS DB by GeneID:26099See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000471507.5 ENSP00000419589.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471507.5Link to Ensembl Protein Viewer:ENSP00000419589.1Re-query CCDS DB by Nucleotide ID:ENST00000471507Re-query CCDS DB by Protein ID:ENSP00000419589
Original member Current member NCBI NM_001271869.2 NP_001258798.1 Accepted alive Link to Nucleotide Sequence:NM_001271869.2Link to Protein Sequence:NP_001258798.1Re-query CCDS DB by Nucleotide ID:NM_001271869Re-query CCDS DB by Protein ID:NP_001258798Link to BLAST:NP_001258798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258798.1 151 Q7Z422-5 151 100% 0 0

Chromosomal Locations for CCDS 60000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16367258 16367308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16391375 16391424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16393231 16393482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16395038 16395140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGAAGATGAGGAGGTCGCTGAGAGCTGGGAAGAGGCGGCAGACAGCGGGGAAATAGACAGACGGTTGG
AAAAAAAACTGAAGATCACACAAAAAGAGAGGAAATCCAAATCTCCTCCCAAAGTGCCCATTGTGATTCA
GGACGATAGCCTTCCCGCGGGGCCCCCTCCACAGATCCGCATCCTCAAGAGGCCCACCAGCAACGGTGTG
GTCAGCAGCCCCAACTCCACCAGCAGGCCCACCCTTCCAGTCAAGTCCCTAGCACAGCGAGAGGCCGAGT
ACGCCGAGGCCCGGAAGCGGATCCTGGGCAGCGCCAGCCCCGAGGAGGAGCAGGAGAAACCCATCCTCGA
CAGGCCAACCAGGATCTCCCAACCCGAAGACAGCAGGCAGCCCAATAATGTGATCAGACAGCCTTTGGGT
CCTGATGGGTCTCAAGGCTTCAAACAGCGCAGATAA

Translation (151 aa):
MEDEEVAESWEEAADSGEIDRRLEKKLKITQKERKSKSPPKVPIVIQDDSLPAGPPPQIRILKRPTSNGV
VSSPNSTSRPTLPVKSLAQREAEYAEARKRILGSASPEEEQEKPILDRPTRISQPEDSRQPNNVIRQPLG
PDGSQGFKQRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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