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Report for CCDS47671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47671.1 Public Homo sapiens 7 IFT22 24 110 108 CCDS HistoryNCBI Gene:64792Re-query CCDS DB by CCDS ID:47671.1Re-query CCDS DB by GeneID:64792See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47671.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517481.5 ENSP00000429202.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517481.5Link to Ensembl Protein Viewer:ENSP00000429202.1Re-query CCDS DB by Nucleotide ID:ENST00000517481Re-query CCDS DB by Protein ID:ENSP00000429202
Original member Current member EBI ENST00000498704.6 ENSP00000429648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498704.6Link to Ensembl Protein Viewer:ENSP00000429648.1Re-query CCDS DB by Nucleotide ID:ENST00000498704Re-query CCDS DB by Protein ID:ENSP00000429648
Original member Current member EBI ENST00000621899.4 ENSP00000478948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621899.4Link to Ensembl Protein Viewer:ENSP00000478948.1Re-query CCDS DB by Nucleotide ID:ENST00000621899Re-query CCDS DB by Protein ID:ENSP00000478948
Original member Current member NCBI NM_001130821.3 NP_001124293.1 Accepted alive Link to Nucleotide Sequence:NM_001130821.3Link to Protein Sequence:NP_001124293.1Re-query CCDS DB by Nucleotide ID:NM_001130821Re-query CCDS DB by Protein ID:NP_001124293Link to BLAST:NP_001124293.1
Original member Current member NCBI NM_001130822.3 NP_001124294.1 Accepted alive Link to Nucleotide Sequence:NM_001130822.3Link to Protein Sequence:NP_001124294.1Re-query CCDS DB by Nucleotide ID:NM_001130822Re-query CCDS DB by Protein ID:NP_001124294Link to BLAST:NP_001124294.1
Original member Current member NCBI NM_001287525.2 NP_001274454.1 Accepted alive Link to Nucleotide Sequence:NM_001287525.2Link to Protein Sequence:NP_001274454.1Re-query CCDS DB by Nucleotide ID:NM_001287525Re-query CCDS DB by Protein ID:NP_001274454Link to BLAST:NP_001274454.1
Original member Current member NCBI NM_001287526.1 NP_001274455.1 Accepted alive Link to Nucleotide Sequence:NM_001287526.1Link to Protein Sequence:NP_001274455.1Re-query CCDS DB by Nucleotide ID:NM_001287526Re-query CCDS DB by Protein ID:NP_001274455Link to BLAST:NP_001274455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124293.1 108 Q9H7X7-3 108 100% 0 0
NP_001124294.1 108 Q9H7X7-3 108 100% 0 0
NP_001274454.1 108 Q9H7X7-3 108 100% 0 0
NP_001274455.1 108 Q9H7X7-3 108 100% 0 0

Chromosomal Locations for CCDS 47671.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101315134 101315282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101316340 101316517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGAAGGATGCTCATGGAGTGGTGATCGTCTTCAATGCTGACATCCCAAGCCACCGGAAGGAAATGGAGA
TGTGGTATTCCTGCTTTGTCCAACAGCCGTCCTTACAGGACACACAGTGTATGCTAATTGCACACCACAA
ACCAGGCTCTGGAGATGATAAAGGAAGCCTGTCTTTGTCGCCACCCTTGAACAAGCTGAAGCTGGTGCAC
TCAAACCTGGAAGATGACCCTGAGGAGATCCGGATGGAATTCATAAAGTATTTAAAAAGCATAATCAACT
CCATGTCTGAGAGCAGAGACAGGGAGGAGATGTCAATTATGACCTAG

Translation (108 aa):
MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVH
SNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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