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Report for CCDS24064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24064.1 Public Mus musculus 10 Tle6 23 108 98 CCDS HistoryNCBI Gene:114606Re-query CCDS DB by CCDS ID:24064.1Re-query CCDS DB by GeneID:114606See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072020.8 ENSMUSP00000071905.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072020.8Link to Ensembl Protein Viewer:ENSMUSP00000071905.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000072020Re-query CCDS DB by Protein ID:ENSMUSP00000071905
Original member Current member NCBI NM_053254.2 NP_444484.1 Accepted alive Link to Nucleotide Sequence:NM_053254.2Link to Protein Sequence:NP_444484.1Re-query CCDS DB by Nucleotide ID:NM_053254Re-query CCDS DB by Protein ID:NP_444484Link to BLAST:NP_444484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444484.1 581 Q9WVB3 581 100% 0 0

Chromosomal Locations for CCDS 24064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81591035 81591139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81591260 81591336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81591886 81592039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81592713 81592854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81593995 81594242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81594327 81594585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81595208 81595245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81595323 81595405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81595480 81595555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81595845 81596255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81598611 81598656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81599077 81599138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81600035 81600079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGACTTCCCACAGACAGAGCAGTGACACCTTTGGTGGAATTTTGCCTTCCACCTTATCCAGTCGGTATT
TGTCCATCGTGAACCAGCTTCCGGAGGAGTTCAGCAGCGTCGTCTCTGAAATGATGGTTCACCTAGAGAA
CATCTTCAGCCTGGCAGAAAACTTCTTCCAGGCGATAGAGCGCTTCAGTAGAACCCCAGACCTCCTGGAG
AGGAACAAGATGAGTATTGGTGTTGGGGCTGAAGGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCC
CAATGGGCTCTGCCCAGACCACAGAGAACTCAGCTAAGGAAGAAGACAAACAGGTCCCAGAGTCTGCAGC
CCTCCAGCACCCCAAGTTCAAAAGCACCCCGGGGCCTCAGCTGCCCACCAGACGTCGGTTCCTCTCAGAG
AGTGATGAGCTCCAGGACCCACAGCCGGTCTGGGACGCGGAGCCCCAGTTCTGTCAAGGCTTCCTGATCC
AGGGACTCTGGGAACTTTTCATGGACAGCCGCCAAAAGAACCAACAGGAACACGGGGGTGAGGATTCCTC
ACAGGAAAGCAAAGATTCAGGCCTGTGTGACTTTAAACCAGAACCTCAGCCCAGGCACAGAAACAGCCTG
AGTGACTCTGCCGACCCCTTCCTGATCAAGTCTCCCTCAGCTCTTCTAGATTATTACCAAGAAGACGTCA
GTCGGCCCCAACCTGAGACGCAGGAATCTTCTGGAAGAGCTGATAAATTTCTGAAGCCCTTGTCCTGGGG
CTCTGAAGTCTTAGAGAGCAGCTGTAATCAGCCTAGCACAGCACTCTGGCAATTAGAGAGGTTCACTGTC
CCCCAAGCACTGCAGAAGGTGCGTGTGCTGAAGCACCAGGAACTGCTATTGGTGGTAGCTGTGAGCTCCT
TCACGCGGCACGTCTTCACCTGCAGCCAGAGCGGCATCAAGGTGTGGAACCTCGTGAACCAGGTGGCCGA
GGACAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTG
CTGTCCTCCAACAGCAGGACCCTGTTCGCGGGTGGATACAACTTACCTGGCGTGATCGTGTGGGACCTGG
CAGCCCCATCCCTGTATGAGAAGTGCCAGCTGCCCTGCGAGGGCCTGTCCTGCCAGGCACTGGCCAACAC
AAAGGAAAACATGGCCCTTGCCGGCTTCACAGATGGCACGGTCAGGATATGGGACCTACGGACTCAGGAA
ATAGTCAGGAACCTCAAAGGCCCTACCAATTCGGCCAGGAACCTTGTGGTCAAAGATGACAACATCTGGA
CAGGGGGTCTGGACGCCTGCCTGCGATGCTGGGACCTGCGGATGGCCAAGGTGTCACTGGAGCATCTGTT
CCAGTCCCAGATCATGAGCCTGGCTCACAGTCCGACCGAAGACTGGCTGCTGCTGGGCCTGGCCAATGGC
CAGCACTGCCTGTTCAACAGCAGGAAGAGGGACCAGGTGCTCACTGTGGACACCAAGGACAACACCATCT
TAGGCCTCAAGTTCTCCCCAAATGGCAAGTGGTGGGCGAGCGTCGGTATGGGCAACTTCATCACGGTCCA
CAGCATGCCCACCGGAGCAAAACTGTTCCAGGTCCCCGAGGTTGGCCCTGTCAGATGCTTCGACATGACT
GAGAACGGCAGGCTCATCATCACAGGATCCAGGGACTGTGCCTCGGTGTACCACATCAAGTACTGA

Translation (581 aa):
MTSHRQSSDTFGGILPSTLSSRYLSIVNQLPEEFSSVVSEMMVHLENIFSLAENFFQAIERFSRTPDLLE
RNKMSIGVGAEGDSWPCHVSHEAPMGSAQTTENSAKEEDKQVPESAALQHPKFKSTPGPQLPTRRRFLSE
SDELQDPQPVWDAEPQFCQGFLIQGLWELFMDSRQKNQQEHGGEDSSQESKDSGLCDFKPEPQPRHRNSL
SDSADPFLIKSPSALLDYYQEDVSRPQPETQESSGRADKFLKPLSWGSEVLESSCNQPSTALWQLERFTV
PQALQKVRVLKHQELLLVVAVSSFTRHVFTCSQSGIKVWNLVNQVAEDRDPESHLKCSVQDNKVYLRTCL
LSSNSRTLFAGGYNLPGVIVWDLAAPSLYEKCQLPCEGLSCQALANTKENMALAGFTDGTVRIWDLRTQE
IVRNLKGPTNSARNLVVKDDNIWTGGLDACLRCWDLRMAKVSLEHLFQSQIMSLAHSPTEDWLLLGLANG
QHCLFNSRKRDQVLTVDTKDNTILGLKFSPNGKWWASVGMGNFITVHSMPTGAKLFQVPEVGPVRCFDMT
ENGRLIITGSRDCASVYHIKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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