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Report for CCDS49112.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49112.2 Reviewed, update pending Mus musculus 12 Ltbp2 23 108 98 CCDS HistoryNCBI Gene:16997Re-query CCDS DB by CCDS ID:49112.2Re-query CCDS DB by GeneID:16997See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49112.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163189.7 ENSMUSP00000127693.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163189.7Link to Ensembl Protein Viewer:ENSMUSP00000127693.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163189Re-query CCDS DB by Protein ID:ENSMUSP00000127693
Original member Current member NCBI NM_013589.4 NP_038617.4 Pending alive Link to Nucleotide Sequence:NM_013589.4Link to Protein Sequence:NP_038617.4Re-query CCDS DB by Nucleotide ID:NM_013589Re-query CCDS DB by Protein ID:NP_038617Link to BLAST:NP_038617.4

Chromosomal Locations for CCDS 49112.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84784250 84784395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84784754 84784903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84785204 84785485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84785728 84785895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84785974 84786111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84786356 84786484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84787366 84787449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84787904 84788095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84789084 84789227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84789758 84789883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84790242 84790373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84790995 84791117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84791597 84791722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84791822 84791944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84792957 84793082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84793619 84793744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84793944 84794066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84795041 84795160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84799372 84799491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84804357 84804485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84806300 84806413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84807171 84807210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84808425 84808444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84809148 84809363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84809585 84809749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84813240 84813362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84815962 84816036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84828448 84828550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84829134 84829417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84830016 84830222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84830643 84830813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84831748 84831923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84853687 84853939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84868677 84868747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84875756 84876231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5301 nt):
ATGAGAGCGCCGACCACCGCTCGCTGCTCCGGATGCATCCGACGGGTGCGTTGGAGGGGCTTCCTGCCAC
TTGTCCTGGCTGTCTTGATGGGGACAAGTCATGCCCAACGGGATTCCATAGGGAGATACGAACCAGCTAG
CAGGGATGCGAATCGGTTGTGGCACCCCGTGGGCAGCCACCCCGCAGCGGCTGCAGCCAAGGTGTACAGT
CTGTTCCGAGAGCCTGACGCGCCGGTCCCCGGCTTGTCGCCCTCTGAGTGGAACCAGCCGGCCCAGGGGA
ACCCTGGGAGGCTCGCAGAGGCCGAGGCCAGGAGGCCACCCCGAACCCAGCAGCTGCGTCGAGTCCAGCC
ACCTGTCCAGACTCGGAGAAGCCATCCCCGGGGCCAGCAGCAGATAGCAGCCAGGGCTGCACCTTCTGTC
GCGCGCCTGGAAACCCCTCAGCGACCCGCGGCTGCACGGCGAGGGCGGCTCACCGGGAGAAATGTCTGCG
GGGGACAGTGCTGCCCAGGATGGACAACATCAAACAGCACCAACCACTGTATCAAACCTGTGTGTCAGCC
TCCCTGTCAGAACCGAGGCTCCTGCAGCAGGCCCCAGGTCTGTATCTGCCGTTCTGGCTTCCGTGGGGCG
CGCTGTGAGGAGGTCATCCCTGAGGAGGAATTTGACCCTCAGAATGCCAGGCCTGTGCCCAGACGCTCAG
TGGAGAGAGCACCCGGTCCTCACAGAAGCAGTGAGGCCAGAGGAAGTCTAGTGACCAGAATACAGCCGCT
GGTACCACCACCATCACCACCTCCATCTCGGCGCCTCAGCCAGCCCTGGCCCCTGCAGCAGCACTCAGGG
CCGTCCAGGACAGTTCGTCGGTATCCGGCCACTGGTGCCAATGGCCAGCTGATGTCCAACGCTTTGCCTT
CAGGACTCGAGCTGAGAGACAGCAGCCCACAGGCAGCACATGTGAACCATCTCTCACCCCCCTGGGGGCT
GAACCTCACCGAGAAAATCAAGAAAATCAAAGTCGTCTTCACCCCCACCATCTGCAAGCAGACCTGTGCC
CGGGGACGCTGTGCCAACAGCTGTGAGAAGGGTGACACCACCACCTTGTACAGTCAGGGTGGCCATGGGC
ATGACCCCAAGTCTGGCTTCCGTATCTATTTCTGCCAAATCCCCTGCCTGAATGGTGGCCGCTGCATCGG
CCGGGACGAGTGCTGGTGTCCAGCCAACTCCACAGGAAAGTTCTGCCATCTGCCTGTCCCGCAGCCAGAC
AGGGAACCTGCAGGGCGAGGTTCCCGGCACAGAACCCTGCTGGAAGGTCCCCTGAAGCAATCCACCTTCA
CGCTGCCTCTCTCTAACCAGCTCGCCTCTGTGAACCCCTCGCTGGTGAAGGTGCAAATTCATCACCCGCC
TGAGGCCTCTGTGCAGATTCACCAGGTGGCCCGGGTCCGGGGTGAGCTGGACCCCGTGCTGGAGGACAAC
AGTGTGGAGACCAGAGCCTCTCGTCGCCCCCACGGCAACCTAGGCCACAGCCCCTGGGCCAGCAACAGCA
TACCCGCTCGGGCCGGAGAGGCCCCTCGGCCACCACCAGTGCTGTCTAGGCATTATGGACTTCTGGGCCA
GTGTTACCTGAGCACGGTGAATGGACAGTGTGCTAACCCCCTAGGGGAGCTGACTTCTCAGGAGGACTGC
TGTGGCAGTGTGGGGACCTTCTGGGGGGTGACCTCCTGTGCTCCCTGCCCACCCAGACCAGCCTTCCCAG
TGATTGAAAATGGCCAGCTGGAGTGTCCCCAAGGATACAAGAGACTGAACCTCAGCCACTGCCAAGATAT
CAATGAGTGCCTGACCCTGGGCCTCTGCAAGGACTCGGAGTGCGTGAACACCAGGGGCAGCTACCTGTGC
ACCTGCAGGCCTGGCCTCATGCTGGATCCGTCAAGGAGCCGCTGCGTATCGGACAAGGCTGTCTCCATGC
AGCAGGGACTATGCTACCGGTCACTGGGGTCTGGTACCTGCACCCTGCCTTTGGTTCATCGGATCACCAA
GCAGATATGCTGCTGCAGCCGTGTGGGCAAAGCCTGGGGTAGCACATGTGAACAGTGTCCCCTGCCTGGC
ACAGAAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACACCTACTCGAGCTCAGACATCCGCCTGT
CTATGAGGAAAGCCGAAGAAGAGGAACTGGCTAGCCCCTTAAGGGAGCAGACAGAGCAGAGCACTGCACC
CCCACCTGGGCAAGCAGAGAGGCAACCACTCCGGGCAGCCACCGCCACCTGGATTGAGGCTGAGACCCTC
CCTGACAAAGGTGACTCTCGGGCTGTTCAGATCACAACCAGTGCTCCCCACCTACCTGCCCGGGTACCAG
GGGATGCCACTGGAAGACCAGCACCATCCTTGCCTGGACAGGGCATTCCAGAGAGTCCAGCAGAAGAGCA
AGTGATTCCCTCCAGTGATGTCTTGGTGACACACAGCCCCCCAGACTTTGATCCATGTTTTGCTGGAGCC
TCCAACATCTGTGGCCCTGGGACCTGTGTGAGCCTCCCAAATGGATACAGATGTGTCTGCAGCCCTGGCT
ACCAGCTACACCCCAGCCAAGACTACTGTACTGATATCGATGAGTGTGAGCAGCCCGGGGTGTGCAGTGG
TGGGCGATGCAGCAACACGGAGGGCTCGTACCACTGCGAGTGTGATCGGGGCTACATCATGGTCAGGAAA
GGACACTGTCAAGATATCAACGAATGCCGTCACCCTGGTACCTGCCCTGATGGGAGATGCGTCAACTCCC
CTGGCTCCTACACTTGTCTGGCCTGTGAGGAGGGCTATGTAGGCCAGAGTGGGAGCTGTGTAGATGTCAA
TGAGTGTCTGACCCCTGGGATATGTACCCATGGAAGGTGCATCAACATGGAAGGCTCCTTTAGATGCTCC
TGTGAGCCGGGCTATGAGGTCACCCCAGACAAGAAGGGCTGCCGAGATGTGGACGAGTGTGCCAGCCGAG
CCTCGTGCCCCACCGGCCTCTGCCTCAACACGGAGGGCTCCTTCACCTGCTCAGCCTGTCAGAGCGGGTA
CTGGGTGAACGAAGATGGCACTGCCTGTGAAGACTTGGATGAATGTGCCTTCCCTGGAGTCTGCCCCACA
GGCGTCTGCACCAATACTGTAGGCTCCTTCTCCTGCAAGGACTGTGACAGGGGCTACCGGCCCAACCCCC
TGGGCAACAGATGCGAAGATGTGGATGAGTGTGAAGGTCCCCAAAGCAGCTGCCGGGGAGGCGAATGCAA
GAACACAGAAGGTTCCTACCAATGCCTCTGTCACCAGGGCTTCCAGCTGGTCAATGGCACCATGTGTGAG
GACGTGAATGAGTGTGTTGGGGAAGAGCATTGTGCTCCTCACGGCGAGTGCCTCAACAGCCTGGGCTCCT
TCTTCTGCCTCTGTGCACCCGGCTTTGCTAGTGCTGAGGGGGGCACCAGATGCCAGGATGTTGATGAATG
TGCAGCCACAGACCCGTGTCCGGGAGGACACTGTGTCAACACAGAGGGCTCCTTCAGCTGTCTGTGTGAG
ACTGGCTTCCAGCCCTCCCCAGACAGCGGAGAATGTTTGGATATTGATGAGTGTGAGGACCGTGAAGACC
CGGTGTGCGGAGCCTGGAGGTGTGAGAACAGTCCTGGTTCCTACCGCTGCATCCTGGACTGCCAGCCTGG
CTTCTATGTGGCGCCAAATGGAGACTGCATTGACATAGATGAATGTGCCAATGACACTGTGTGTGGGAAC
CATGGCTTCTGTGACAACACGGACGGCTCCTTCCGCTGCCTGTGTGACCAGGGCTTCGAGACCTCACCAT
CAGGCTGGGAGTGTGTTGATGTGAACGAGTGTGAGCTCATGATGGCAGTGTGTGGGGATGCGCTCTGTGA
GAACGTGGAAGGCTCCTTCCTGTGCCTTTGCGCCAGTGACCTTGAGGAGTACGACGCAGAAGAAGGACAC
TGCCGTCCTCGGGTGGCTGGAGCTCAGAGAATCCCAGAGGTCCGGACAGAGGACCAGGCTCCAAGCCTTA
TCCGCATGGAATGCTACTCTGAACACAATGGTGGTCCTCCCTGCTCTCAAATCCTGGGCCAGAACTCCAC
ACAGGCCGAGTGCTGCTGCACTCAGGGTGCCAGATGGGGAAAGGCCTGTGCGCCCTGCCCATCTGAGGAC
TCAGTTGAATTCAGTCAGCTCTGCCCCAGTGGTCAAGGTTACATCCCAGTGGAAGGAGCCTGGACATTTG
GACAAACCATGTATACAGATGCCGATGAATGTGTACTGTTTGGGCCTGCTCTCTGCCAGAATGGCCGATG
CCTCAACATAGTGCCTGGCTACATTTGCCTGTGCAACCCTGGCTACCACTATGATGCCTCCAGCAGGAAG
TGCCAGGATCACAACGAATGCCAGGACTTGGCCTGTGAGAACGGTGAGTGTGTGAACACAGAAGGCTCCT
TCCATTGCCTCTGCAATCCCCCCCTCACCCTAGACCTCAGTGGGCAGCGCTGTGTGAACAGCACCAGCAG
CACGGAGGACTTCCCTGACCATGACATCCACATGGACATCTGCTGGAAAAAAGTCACCAATGATGTGTGC
AGCCAGCCCTTGCGTGGGCACCATACCACCTATACAGAATGCTGCTGCCAAGATGGGGAGGCCTGGAGCC
AGCAATGCGCTCTGTGCCCGCCCAGGAGCTCTGAGGTCTACGCTCAGCTGTGCAACGTGGCTCGGATTGA
GGCAGAGCGCGGAGCAGGGATCCACTTCCGGCCAGGCTATGAGTATGGCCCTGGCCTGGACGATCTGCCT
GAAAACCTCTACGGCCCAGATGGGGCTCCCTTCTATAACTACCTAGGCCCCGAGGACACTGCCCCTGAGC
CTCCCTTCTCCAACCCAGCCAGCCAGCCGGGAGACAACACACCTGTCCTTGAGCCTCCTCTGCAGCCCTC
TGAACTTCAGCCTCACTATCTAGCCAGCCACTCAGAACCCCTGGCCTCCTTCGAAGGCCTTCAGGCTGAG
GAATGTGGCATCCTGAATGGCTGTGAGAATGGCCGCTGCGTGCGTGTGCGGGAGGGCTACACTTGCGACT
GCTTTGAGGGCTTCCAGCTGGATGCGGCCCACATGGCCTGTGTGGATGTGAACGAGTGTGAAGACTTGAA
CGGGCCTGCAGCACTCTGTGCACACGGTCACTGTGAGAACACAGAGGGTTCCTATCGCTGCCACTGTTCG
CCAGGTTACGTGGCAGAGCCAGGCCCCCCACACTGTGCGGCCAAGGAGTAG

Translation (1766 aa):
MRAPTTARCSGCIRRVRWRGFLPLVLAVLMGTSHAQRDSIGRYEPASRDANRLWHPVGSHPAAAAAKVYS
LFREPDAPVPGLSPSEWNQPAQGNPGRLAEAEARRPPRTQQLRRVQPPVQTRRSHPRGQQQIAARAAPSV
ARLETPQRPAAARRGRLTGRNVCGGQCCPGWTTSNSTNHCIKPVCQPPCQNRGSCSRPQVCICRSGFRGA
RCEEVIPEEEFDPQNARPVPRRSVERAPGPHRSSEARGSLVTRIQPLVPPPSPPPSRRLSQPWPLQQHSG
PSRTVRRYPATGANGQLMSNALPSGLELRDSSPQAAHVNHLSPPWGLNLTEKIKKIKVVFTPTICKQTCA
RGRCANSCEKGDTTTLYSQGGHGHDPKSGFRIYFCQIPCLNGGRCIGRDECWCPANSTGKFCHLPVPQPD
REPAGRGSRHRTLLEGPLKQSTFTLPLSNQLASVNPSLVKVQIHHPPEASVQIHQVARVRGELDPVLEDN
SVETRASRRPHGNLGHSPWASNSIPARAGEAPRPPPVLSRHYGLLGQCYLSTVNGQCANPLGELTSQEDC
CGSVGTFWGVTSCAPCPPRPAFPVIENGQLECPQGYKRLNLSHCQDINECLTLGLCKDSECVNTRGSYLC
TCRPGLMLDPSRSRCVSDKAVSMQQGLCYRSLGSGTCTLPLVHRITKQICCCSRVGKAWGSTCEQCPLPG
TEAFREICPAGHGYTYSSSDIRLSMRKAEEEELASPLREQTEQSTAPPPGQAERQPLRAATATWIEAETL
PDKGDSRAVQITTSAPHLPARVPGDATGRPAPSLPGQGIPESPAEEQVIPSSDVLVTHSPPDFDPCFAGA
SNICGPGTCVSLPNGYRCVCSPGYQLHPSQDYCTDIDECEQPGVCSGGRCSNTEGSYHCECDRGYIMVRK
GHCQDINECRHPGTCPDGRCVNSPGSYTCLACEEGYVGQSGSCVDVNECLTPGICTHGRCINMEGSFRCS
CEPGYEVTPDKKGCRDVDECASRASCPTGLCLNTEGSFTCSACQSGYWVNEDGTACEDLDECAFPGVCPT
GVCTNTVGSFSCKDCDRGYRPNPLGNRCEDVDECEGPQSSCRGGECKNTEGSYQCLCHQGFQLVNGTMCE
DVNECVGEEHCAPHGECLNSLGSFFCLCAPGFASAEGGTRCQDVDECAATDPCPGGHCVNTEGSFSCLCE
TGFQPSPDSGECLDIDECEDREDPVCGAWRCENSPGSYRCILDCQPGFYVAPNGDCIDIDECANDTVCGN
HGFCDNTDGSFRCLCDQGFETSPSGWECVDVNECELMMAVCGDALCENVEGSFLCLCASDLEEYDAEEGH
CRPRVAGAQRIPEVRTEDQAPSLIRMECYSEHNGGPPCSQILGQNSTQAECCCTQGARWGKACAPCPSED
SVEFSQLCPSGQGYIPVEGAWTFGQTMYTDADECVLFGPALCQNGRCLNIVPGYICLCNPGYHYDASSRK
CQDHNECQDLACENGECVNTEGSFHCLCNPPLTLDLSGQRCVNSTSSTEDFPDHDIHMDICWKKVTNDVC
SQPLRGHHTTYTECCCQDGEAWSQQCALCPPRSSEVYAQLCNVARIEAERGAGIHFRPGYEYGPGLDDLP
ENLYGPDGAPFYNYLGPEDTAPEPPFSNPASQPGDNTPVLEPPLQPSELQPHYLASHSEPLASFEGLQAE
ECGILNGCENGRCVRVREGYTCDCFEGFQLDAAHMACVDVNECEDLNGPAALCAHGHCENTEGSYRCHCS
PGYVAEPGPPHCAAKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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