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Report for CCDS24248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24248.1 Public Mus musculus 10 Tac2 23 108 98 CCDS HistoryNCBI Gene:21334Re-query CCDS DB by CCDS ID:24248.1Re-query CCDS DB by GeneID:21334See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026466.4 ENSMUSP00000026466.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026466.4Link to Ensembl Protein Viewer:ENSMUSP00000026466.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026466Re-query CCDS DB by Protein ID:ENSMUSP00000026466
Original member Current member EBI ENSMUST00000179960.7 ENSMUSP00000136622.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179960.7Link to Ensembl Protein Viewer:ENSMUSP00000136622.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179960Re-query CCDS DB by Protein ID:ENSMUSP00000136622
Original member Current member NCBI NM_001199971.1 NP_001186900.1 Accepted alive Link to Nucleotide Sequence:NM_001199971.1Link to Protein Sequence:NP_001186900.1Re-query CCDS DB by Nucleotide ID:NM_001199971Re-query CCDS DB by Protein ID:NP_001186900Link to BLAST:NP_001186900.1
Original member Current member NCBI NM_009312.2 NP_033338.2 Accepted alive Link to Nucleotide Sequence:NM_009312.2Link to Protein Sequence:NP_033338.2Re-query CCDS DB by Nucleotide ID:NM_009312Re-query CCDS DB by Protein ID:NP_033338Link to BLAST:NP_033338.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186900.1 116 P55099 116 100% 0 0
NP_033338.2 116 P55099 116 100% 0 0

Chromosomal Locations for CCDS 24248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127726029 127726133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127728171 127728276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127728447 127728476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127729114 127729167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127729476 127729531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGAGGAGCGCCATGCTGTTTGCGGCTGTCCTCGCCCTCAGCTTGGCTTGGACCTTCGGGGCTGTGTGTG
AGGAGCCACAGGGGCAGGGAGGGAGGCTCAGTAAGGACTCTGATCTCTATCAGCTGCCTCCGTCCCTGCT
TCGGAGACTCTACGACAGCCGCCCTGTCTCTCTGGAAGGATTGCTGAAAGTGCTGAGCAAGGCTAGCGTG
GGACCAAAGGAGACATCACTTCCACAGAAACGTGACATGCACGACTTCTTTGTGGGACTTATGGGCAAGA
GGAACAGCCAACCAGACACTCCCACCGACGTGGTTGAAGAGAACACCCCCAGCTTTGGCATCCTCAAATA
A

Translation (116 aa):
MRSAMLFAAVLALSLAWTFGAVCEEPQGQGGRLSKDSDLYQLPPSLLRRLYDSRPVSLEGLLKVLSKASV
GPKETSLPQKRDMHDFFVGLMGKRNSQPDTPTDVVEENTPSFGILK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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