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Report for CCDS49275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49275.1 Public Mus musculus 13 Pdlim7 23 108 98 CCDS HistoryNCBI Gene:67399Re-query CCDS DB by CCDS ID:49275.1Re-query CCDS DB by GeneID:67399See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046246.12 ENSMUSP00000047173.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046246.12Link to Ensembl Protein Viewer:ENSMUSP00000047173.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046246Re-query CCDS DB by Protein ID:ENSMUSP00000047173
Original member Current member EBI ENSMUST00000155098.7 ENSMUSP00000120465.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155098.7Link to Ensembl Protein Viewer:ENSMUSP00000120465.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155098Re-query CCDS DB by Protein ID:ENSMUSP00000120465
Original member Current member NCBI NM_001114088.2 NP_001107560.1 Accepted alive Link to Nucleotide Sequence:NM_001114088.2Link to Protein Sequence:NP_001107560.1Re-query CCDS DB by Nucleotide ID:NM_001114088Re-query CCDS DB by Protein ID:NP_001107560Link to BLAST:NP_001107560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107560.1 457 Q3TJD7-1 457 100% 0 0

Chromosomal Locations for CCDS 49275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55498648 55498734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55498894 55499009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55499101 55499221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55504658 55504838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55505934 55506168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55506306 55506367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55507330 55507366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55507488 55507624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508208 55508326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508780 55508810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508892 55509043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55512312 55512407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGATTCCTTCAAGGTGGTGCTGGAAGGGCCAGCCCCTTGGGGCTTCCGTCTGCAAGGGGGCAAGGACT
TCAATGTGCCCCTCTCTATCTCTCGGCTCACGCCCGGAGGCAAAGCTGCACAGGCCGGTGTGGCTGTGGG
AGACTGGGTACTGAATATTGACGGTGAGAACGCGGGCAGCCTCACGCACATCGAAGCCCAGAACAAGATC
CGCGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAGAGCCCAGCCTGTTCAGAGCAAACCACAGAAGG
CCCTGACCCCTCCCGCCGACCCCCCGAGGTACACTTTTGCACCAAGCGCCTCCCTCAACAAGACGGCCCG
GCCCTTCGGGGCACCCCCACCTACTGACAGCACCCTGCGGCAGAATGGACAGTTGCTCAGACAGCCGGTC
CCCGATGCCAGCAAGCAGCGGCTGATGGAGGATACCGAAGACTGGCGGCCGCGGCCGGGGACAGGCCAGT
CCCGCTCCTTCCGCATCCTTGCCCACCTCACGGGCACAGAGTTCATGCAAGACCCGGATGAGGAATTCAT
GAAGAAGTCAAGCCAGGTGCCCAGGACAGAAGCCCCAGCCCCAGCCTCAACTATACCCCAGGAATCCTGG
CCTGGCCCCACCACTCCCAGCCCCACCAGCCGCCCACCCTGGGCTGTGGATCCTGCATTTGCTGAGCGCT
ATGCCCCAGACAAAACCAGCACAGTGCTGACCCGGCACAGCCAGCCAGCCACACCCACGCCTCTGCAGAA
CCGCACCTCCATAGTGCAGGCCGCAGCTGGAGGGGGCACAGGAGGGGGCAGCAACAACGGCAAGACTCCT
GTATGCCACCAGTGCCACAAGATCATCCGCGGCCGCTACCTGGTAGCACTGGGCCACGCATACCATCCCG
AGGAGTTTGTGTGCAGCCAGTGTGGAAAGGTCCTGGAAGAGGGTGGCTTCTTCGAGGAGAAGGGAGCTAT
CTTTTGCCCCTCCTGCTATGATGTGCGCTATGCACCCAACTGTGCCAAATGCAAGAAGAAGATCACTGGA
GAGATCATGCATGCTCTGAAGATGACCTGGCACGTCCATTGCTTCACCTGTGCTGCCTGCAAAACGCCAA
TTCGCAACAGAGCCTTTTACATGGAAGAAGGGGCCCCCTACTGCGAGCGAGACTATGAGAAGATGTTTGG
CACAAAATGTCGAGGCTGTGACTTCAAGATTGATGCTGGAGACCGCTTCCTGGAAGCGCTGGGCTTCAGC
TGGCATGACACATGCTTTGTTTGCGCAATATGTCAGATCAACTTGGAAGGAAAGACCTTCTACTCCAAGA
AGGACAAGCCCCTCTGCAAGAGCCACGCCTTCTCTCACGTATGA

Translation (457 aa):
MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKI
RACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGQLLRQPV
PDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSSQVPRTEAPAPASTIPQESW
PGPTTPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQNRTSIVQAAAGGGTGGGSNNGKTP
VCHQCHKIIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVRYAPNCAKCKKKITG
EIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFS
WHDTCFVCAICQINLEGKTFYSKKDKPLCKSHAFSHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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