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Report for CCDS22688.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22688.2 Public Mus musculus 8 Nudt7 23 108 98 CCDS HistoryNCBI Gene:67528Re-query CCDS DB by CCDS ID:22688.2Re-query CCDS DB by GeneID:67528See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22688.2
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22688.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147605.7 ENSMUSP00000114598.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147605.7Link to Ensembl Protein Viewer:ENSMUSP00000114598.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147605Re-query CCDS DB by Protein ID:ENSMUSP00000114598
Original member Current member NCBI NM_024446.5 NP_077766.3 Accepted alive Link to Nucleotide Sequence:NM_024446.5Link to Protein Sequence:NP_077766.3Re-query CCDS DB by Nucleotide ID:NM_024446Re-query CCDS DB by Protein ID:NP_077766Link to BLAST:NP_077766.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077766.3 216 Q99P30-3 216 100% 0 0

Chromosomal Locations for CCDS 22688.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 114133666 114133700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114136338 114136491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114147895 114147993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114151654 114152016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGTCGCGACCTTGTGGACTCCCGGAGCCTGTCAGAAACAATCTGATAGATGATGCCAAGGCTCGCCTGA
GAAAGTCTGATGTCGGGACCAGATATTCTCACCTGTCCTCTAATAAATTCTCTGTCCTTGTACCACTGCT
GGCCAGAGGAGGAAAGTTGTATTTGATGTTCACGGTCCGCTCAGACAAGCTGAAAAGGGAACCTGGAGAA
GTCTGCTTCCCTGGAGGAAAGAGGGACCCGGTGGACACAGATGACACAGCCACTGCTCTCCGTGAAGCCC
AGGAGGAGAATGATGCACTGGTAACCCCCGTAGTGGGTTTTCTAGACCACAACTTCCAGGCCCAACCTAA
TGCTGATGAAGTGAAGGAAGTCTTCTTTGTGCCTTTGGACTATTTCCTCCATCCCCAAGTCTACTACCAG
AAGCAAATCACACAGTCTGGCCGTGATTTCATCATGCATTGCTTCGAGTACAAAGACCCTGAGACTGGTG
TGAACTACCTAATCCAGGGAATGACCTCAAAACTGGCTGTGTTGGTGGCCTTAATTATTTTGGAACAAAG
TCCTGCCTTCAAGATTGATTTTGATCTCCATGACCTGATACCGTCTTGTGAAAGGACCTTCCTTTGGAGA
TATTCTTTAAGCAAGTTGTGA

Translation (216 aa):
MSRPCGLPEPVRNNLIDDAKARLRKSDVGTRYSHLSSNKFSVLVPLLARGGKLYLMFTVRSDKLKREPGE
VCFPGGKRDPVDTDDTATALREAQEENDALVTPVVGFLDHNFQAQPNADEVKEVFFVPLDYFLHPQVYYQ
KQITQSGRDFIMHCFEYKDPETGVNYLIQGMTSKLAVLVALIILEQSPAFKIDFDLHDLIPSCERTFLWR
YSLSKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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