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Report for CCDS33887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33887.1 Public Homo sapiens 3 SPTSSB 24 110 108 CCDS HistoryNCBI Gene:165679Re-query CCDS DB by CCDS ID:33887.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33887.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359175.9 ENSP00000352097.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359175.9Link to Ensembl Protein Viewer:ENSP00000352097.4Re-query CCDS DB by Nucleotide ID:ENST00000359175Re-query CCDS DB by Protein ID:ENSP00000352097
Original member Current member EBI ENST00000497137.1 ENSP00000420115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000497137.1Link to Ensembl Protein Viewer:ENSP00000420115.1Re-query CCDS DB by Nucleotide ID:ENST00000497137Re-query CCDS DB by Protein ID:ENSP00000420115
Original member Current member EBI ENST00000620149.2 ENSP00000480827.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620149.2Link to Ensembl Protein Viewer:ENSP00000480827.1Re-query CCDS DB by Nucleotide ID:ENST00000620149Re-query CCDS DB by Protein ID:ENSP00000480827
Original member Current member NCBI NM_001040100.2 NP_001035189.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040100.2Link to Protein Sequence:NP_001035189.1Re-query CCDS DB by Nucleotide ID:NM_001040100Re-query CCDS DB by Protein ID:NP_001035189Link to BLAST:NP_001035189.1
Original member Current member NCBI NM_001320679.2 NP_001307608.1 Accepted alive Link to Nucleotide Sequence:NM_001320679.2Link to Protein Sequence:NP_001307608.1Re-query CCDS DB by Nucleotide ID:NM_001320679Re-query CCDS DB by Protein ID:NP_001307608Link to BLAST:NP_001307608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035189.1 76 Q8NFR3 76 100% 0 0
NP_001307608.1 76 Q8NFR3 76 100% 0 0

Chromosomal Locations for CCDS 33887.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 161346093 161346323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (231 nt):
ATGGATTTGAGGCGTGTGAAGGAATATTTCTCCTGGCTCTACTATCAATACCAAATCATTAGCTGCTGTG
CTGTTTTAGAGCCCTGGGAGCGATCTATGTTTAACACCATCTTACTAACCATTATTGCTATGGTGGTATA
CACTGCCTATGTCTTTATTCCAATCCACATTCGCCTGGCTTGGGAATTTTTCTCAAAAATATGTGGATAT
CACAGTACAATTTCTAATTGA

Translation (76 aa):
MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLAWEFFSKICGY
HSTISN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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