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Report for CCDS50157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50157.1 Public Mus musculus 17 Khsrp 23 108 98 CCDS HistoryNCBI Gene:16549Re-query CCDS DB by CCDS ID:50157.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007814.9 ENSMUSP00000007814.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007814.9Link to Ensembl Protein Viewer:ENSMUSP00000007814.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007814Re-query CCDS DB by Protein ID:ENSMUSP00000007814
Original member Current member NCBI NM_010613.3 NP_034743.3 Accepted alive Link to Nucleotide Sequence:NM_010613.3Link to Protein Sequence:NP_034743.3Re-query CCDS DB by Nucleotide ID:NM_010613Re-query CCDS DB by Protein ID:NP_034743Link to BLAST:NP_034743.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034743.3 748 Q3U0V1 748 100% 0 0

Chromosomal Locations for CCDS 50157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57022693 57022970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57023059 57023136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57023213 57023413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57023505 57023593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57023827 57023936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57024011 57024171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57024247 57024492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57024789 57024891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57024980 57025078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57025308 57025406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57025496 57025670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57025880 57025937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57026843 57026914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57027049 57027098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57027817 57027856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57027956 57027994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57029042 57029138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57031148 57031399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGTCGGACTACAACACCGGAGGTCCCCCGCCCGGCCCGCCGCCTCCCGCTGGCGGCGGAGGGGGAGCCG
CGGGTGCGGGAGGAGGCCCTCCGCCGGGCCCGCCGGGCGCGGGAGACCGGGGCGGCGGAGGCCCTGGCGG
CGGCGGCCCGGGTGGAGGAGGCGCGTCCGGGGGCCCCTCACAGCCTCCCGGTGGCGGCGGCCCTGGGATC
CGCAAGGACGCCTTCGCCGACGCCGTGCAGCGGGCCCGCCAGATTGCAGCCAAAATCGGAGGTGATGCTG
CTACCACCGTGAATAACAACACTCCTGATTTTGGCTTTGGGGGCCAAAAGAGACAGCTGGAAGATGGAGA
CCAGCCAGACAGCAAGAAACTGGCTTCCCAGGGAGACTCGATTGGTTCTCAACTGGGACCCATCCATCCT
CCCCCCAGGACCTCAATGACAGAAGAGTATAGGGTTCCGGATGGCATGGTGGGCTTGATTATTGGCAGAG
GTGGTGAGCAGATAAACAAAATCCAGCAGGACTCAGGCTGCAAAGTTCAGATCTCACCAGATAGTGGTGG
CCTCCCTGAGCGCAGCGTGTCTCTGACTGGAGCACCTGAGTCTGTCCAAAAGGCAAAGATGATGCTGGAT
GACATCGTGTCTCGGGGCCGTGGTGGCCCCCCAGGACAGTTTCACGACAACGCCAATGGGGGTCAGAATG
GCACAGTGCAGGAGATCATGATCCCTGCTGGCAAGGCTGGCCTGGTCATTGGTAAAGGTGGAGAGACCAT
CAAGCAGCTGCAGGAGCGGGCTGGGGTGAAGATGATTTTAATTCAGGATGGCTCCCAGAACACAAATGTG
GACAAGCCACTGCGGATTATCGGGGACCCATACAAAGTACAGCAAGCCTGTGAGATGGTGATGGACATCC
TGCGAGAACGTGACCAAGGTGGCTTTGGGGACCGCAATGAATACGGATCTCGAGTTGGTGGAGGCATTGA
TGTGCCTGTACCCAGGCATTCAGTTGGTGTAGTCATTGGCCGGAGTGGAGAGATGATCAAGAAGATCCAG
AATGATGCCGGTGTGCGCATCCAGTTCAAGCAAGATGATGGGACCGGCCCTGAGAAGATTGCTCACATCA
TGGGGCCTCCAGATCGGTGTGAACACGCAGCCCGGATCATCAATGACCTCCTCCAGAGTCTTCGGAGTGG
GCCCCCGGGTCCTCCAGGGGCCCCTGGCATGCCCCCTGGGGGCAGGGGCCGGGGCCGAGGCCAAGGCAAC
TGGGGCCCTCCTGGAGGGGAGATGACTTTCTCCATTCCTACCCATAAGTGTGGGCTGGTCATTGGCCGAG
GCGGGGAGAATGTGAAGGCCATTAACCAGCAGACAGGCGCCTTTGTGGAAATATCTCGGCAGCTGCCACC
CAATGGGGACCCCAATTTCAAGTTGTTTGTGATCCGGGGATCGCCCCAGCAGATTGACCATGCAAAGCAG
CTCATTGAGGAGAAGATAGAGGGTCCCCTCTGCCCAGTTGGACCAGGCCCTGGGGGACCAGGCCCTGCTG
GACCCATGGGGCCTTTCAACCCTGGACCCTTCAACCAGGGGCCTCCAGGGGCACCCCCACATGCTGGTGG
TCCCCCTCCTCACCAGTACCCGCCTCAGGGCTGGGGCAATACCTACCCCCAGTGGCAGCCACCTGCCCCT
CACGACCCAAACAAAGCTGCTGCAGCGGCTACAGATCCTAATGCTGCCTGGGCTGCCTACTACTCTCACT
ACTACCAGCAACCCCCAGGTCCTGTGCCAGGCCCTGCCCCAGCCCCTGCAGCCCCACCTGCACAGGGGGA
ACCCCCCCAGCCTCCACCCACTGGCCAATCAGACTACACCAAGGCTTGGGAAGAGTATTACAAAAAAATT
GGCCAGCAGCCCCAGCAGCCTGGGGCACCCCCACAGCAGGACTACACCAAGGCCTGGGAGGAGTACTACA
AGAAGCAAGCACAAGTGGCCACTGGTGGGGGTCCTGGAGCACCCCCTGGCTCCCAGCCTGATTACAGTGC
TGCCTGGGCTGAGTATTACAGACAGCAGGCTGCTTACTACGGACAGACCCCAGGCCCTGGTGGCCCACAG
CCACCTCCCACCCAGCAGGGACAGCAGCAGGCAAGTGGGAACTGCCACCCTCCTCCTCCTCCTTTCTCCT
TCCAACCCCCGGCCACCGTCCATCCTGCCTTAGTGGGTAGCGCCGGAAACCCTTTCCCCTGCGGGGTGTG
CCCTTGA

Translation (748 aa):
MSDYNTGGPPPGPPPPAGGGGGAAGAGGGPPPGPPGAGDRGGGGPGGGGPGGGGASGGPSQPPGGGGPGI
RKDAFADAVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDSKKLASQGDSIGSQLGPIHP
PPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLD
DIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV
DKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQ
NDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGN
WGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQ
LIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAP
HDPNKAAAAATDPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPPTGQSDYTKAWEEYYKKI
GQQPQQPGAPPQQDYTKAWEEYYKKQAQVATGGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPGPGGPQ
PPPTQQGQQQASGNCHPPPPPFSFQPPATVHPALVGSAGNPFPCGVCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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