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Report for CCDS47763.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47763.2 Public Homo sapiens 8 XKR5 24 110 108 CCDS HistoryNCBI Gene:389610Re-query CCDS DB by CCDS ID:47763.2Re-query CCDS DB by GeneID:389610See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 47763.1
This CCDS ID was withdrawn because the reference genome contains an insertion in the CDS that results in a frameshift, and it cannot represent the correct protein. This insertion corresponds to the reference SNPs rs11338621 and rs66614253.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47763.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618742.3 ENSP00000483879.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000618742.3Link to Ensembl Protein Viewer:ENSP00000483879.1Re-query CCDS DB by Nucleotide ID:ENST00000618742Re-query CCDS DB by Protein ID:ENSP00000483879
Original member Current member NCBI NM_207411.5 NP_997294.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207411.5Link to Protein Sequence:NP_997294.3Re-query CCDS DB by Nucleotide ID:NM_207411Re-query CCDS DB by Protein ID:NP_997294Link to BLAST:NP_997294.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997294.3 686 Q6UX68-1 686 100% 0 0

Chromosomal Locations for CCDS 47763.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 6811198 6812339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6815807 6815918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6821869 6822038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6823521 6823730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6825165 6825349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6832717 6832900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6835436 6835493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGCACGCGAGGCTCCTGGGGCTCTCGGCCCTGCTGCAGGCGGCCGAGCAGAGCGCGCGCCTTTACACCG
TGGCTTACTACTTCACCACAGGACGGCTTCTGTGGGGGTGGCTGGCCCTTGCTGTCCTCCTGCCCGGGTT
CTTGGTCCAGGCCCTGAGCTACCTGTGGTTCCGAGCAGACGGGCATCCAGGGCATTGCTCCTTGATGATG
CTGCACCTCCTACAGCTTGGTGTTTGGAAGCGGCACTGGGACGCTGCACTGACCAGTCTGCAGAAGGAAC
TGGAGGCTCCCCACCGAGGCTGGCTGCAGCTGCAGGAGGCCGACCTGTCGGCCCTTCGACTCTTGGAGGC
CCTGCTGCAGACTGGGCCCCACCTGCTGCTTCAGACATATGTTTTTCTAGCCTCAGACTTCACAGATATT
GTGCCAGGGGTGAGCACCCTGTTTTCCTGGTCCTCACTCTCCTGGGCACTGGTGTCCTACACTCGCTTCA
TGGGCTTCATGAAGCCAGGCCACCTGGCCATGCCATGGGCCGCCCTCTTCTGCCAGCAGCTCTGGAGGAT
GGGCATGTTGGGAACCCGCGTGCTGAGTCTGGTTCTGTTCTACAAAGCCTACCACTTTTGGGTTTTTGTG
GTTGCAGGTGCCCACTGGCTGGTGATGACATTCTGGCTTGTCGCCCAGCAGAGTGACATCATCGACAGCA
CCTGCCACTGGAGGCTGTTCAACCTGCTCGTGGGGGCCGTGTACATCCTCTGCTACCTCAGCTTCTGGGA
CAGCCCTTCTAGAAATAGGATGGTCACGTTCTACATGGTCATGCTGTTGGAGAACATCATCCTGTTGCTG
TTGGCCACCGACTTTCTCCAGGGGGCATCGTGGACCAGCCTGCAGACCATAGCTGGGGTCCTGTCTGGAT
TTCTGATTGGCAGTGTCTCACTGGTAATTTATTACAGCCTGCTGCATCCAAAATCCACAGACATCTGGCA
GGGCTGCCTAAGGAAGTCCTGTGGCATTGCAGGAGGTGATAAAACAGAGAGAAGAGATTCTCCCCGGGCC
ACAGATCTAGCTGGGAAGAGAACCGAGAGCTCAGGCTCATGCCAAGGGGCAAGTTATGAACCAACCATTT
TAGGGAAGCCCCCTACCCCTGAGCAGGTCCCCCCAGAGGCTGGGCTGGGGACCCAGGTTGCTGTGGAGGA
CTCTTTCCTCAGTCATCACCACTGGCTGTGGGTGAAACTTGCCCTAAAAACAGGAAATGTGTCTAAGATC
AATGCCGCCTTTGGAGATAACAGTCCTGCCTATTGTCCACCTGCATGGGGGTTGAGTCAACAGGACTACC
TGCAGAGAAAGGCCTTGTCTGCCCAGCAAGAGCTCCCATCCTCATCCCGTGACCCCTCAACCTTAGAGAA
CAGCTCTGCGTTTGAAGGTGTCCCTAAAGCAGAGGCCGACCCATTGGAAACCTCAAGTTACGTATCTTTT
GCCAGCGATCAGCAGGATGAAGCACCTACCCAGAACCCAGCAGCCACGCAGGGGGAGGGCACCCCAAAGG
AAGGAGCTGACGCTGTTTCTGGGACACAGGGGAAGGGGACAGGTGGGCAGCAGAGAGGAGGGGAAGGACA
GCAGAGTTCCACGTTGTACTTCAGCGCCACTGCAGAAGTGGCCACATCCTCACAACAAGAAGGCAGCCCA
GCTACTCTGCAAACGGCCCACTCTGGAAGGAGGCTGGGAAAGAGCAGCCCTGCCCAGCCTGCATCGCCCC
ACCCAGTGGGCTTGGCGCCCTTCCCCGACACCATGGCCGACATTAGCCCCATCCTAGGCACAGGCCCATG
TAGAGGCTTCTGCCCCAGTGCAGGCTTCCCTGGAAGAACCCTCAGTATCTCAGAGCTAGAGGAGCCGCTG
GAGCCCAAAAGGGAGCTAAGTCACCATGCAGCTGTTGGTGTGTGGGTGTCATTGCCACAGCTGAGGACTG
CCCATGAGCCCTGCCTCACGTCCACCCCTAAGTCTGAGTCTATCCAAACGGACTGCAGCTGCAGGGAACA
GATGAAGCAAGAGCCGAGTTTTTTCATCTGA

Translation (686 aa):
MHARLLGLSALLQAAEQSARLYTVAYYFTTGRLLWGWLALAVLLPGFLVQALSYLWFRADGHPGHCSLMM
LHLLQLGVWKRHWDAALTSLQKELEAPHRGWLQLQEADLSALRLLEALLQTGPHLLLQTYVFLASDFTDI
VPGVSTLFSWSSLSWALVSYTRFMGFMKPGHLAMPWAALFCQQLWRMGMLGTRVLSLVLFYKAYHFWVFV
VAGAHWLVMTFWLVAQQSDIIDSTCHWRLFNLLVGAVYILCYLSFWDSPSRNRMVTFYMVMLLENIILLL
LATDFLQGASWTSLQTIAGVLSGFLIGSVSLVIYYSLLHPKSTDIWQGCLRKSCGIAGGDKTERRDSPRA
TDLAGKRTESSGSCQGASYEPTILGKPPTPEQVPPEAGLGTQVAVEDSFLSHHHWLWVKLALKTGNVSKI
NAAFGDNSPAYCPPAWGLSQQDYLQRKALSAQQELPSSSRDPSTLENSSAFEGVPKAEADPLETSSYVSF
ASDQQDEAPTQNPAATQGEGTPKEGADAVSGTQGKGTGGQQRGGEGQQSSTLYFSATAEVATSSQQEGSP
ATLQTAHSGRRLGKSSPAQPASPHPVGLAPFPDTMADISPILGTGPCRGFCPSAGFPGRTLSISELEEPL
EPKRELSHHAAVGVWVSLPQLRTAHEPCLTSTPKSESIQTDCSCREQMKQEPSFFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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