NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS59360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59360.1 Public Homo sapiens 19 C19orf67 24 110 108 CCDS HistoryNCBI Gene:646457Re-query CCDS DB by CCDS ID:59360.1Re-query CCDS DB by GeneID:646457See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 59360.1
This gene lacks full-length human transcript support, and therefore the exon combination represented in this CCDS ID is inferred; it is supported by tiled partial transcript alignments (human HY028687.1, DR008137.1, DN831393.1 and others) and by homologous transcript alignments (mouse BC147276.1 and others).

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 59360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000548523.6 ENSP00000449137.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000548523.6Link to Ensembl Protein Viewer:ENSP00000449137.1Re-query CCDS DB by Nucleotide ID:ENST00000548523Re-query CCDS DB by Protein ID:ENSP00000449137
Original member Current member NCBI NM_001277378.2 NP_001264307.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277378.2Link to Protein Sequence:NP_001264307.1Re-query CCDS DB by Nucleotide ID:NM_001277378Re-query CCDS DB by Protein ID:NP_001264307Link to BLAST:NP_001264307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264307.1 358 A6NJJ6 358 100% 0 0

Chromosomal Locations for CCDS 59360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14081834 14082008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14082469 14082603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14083237 14083422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14083505 14083605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14083733 14083877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14085293 14085627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCTACAGAGCAGTGGTTCGAGGGGTCGCTCCCCCTGGACCCTGGAGAAACACCGCCTCCAGACGCCT
TGGAACCTGGGACGCCGCCCTGCGGAGACCCCTCCAGGTCGACGCCCCCTGGCAGGCCTGGGAACCCATC
TGAGCCGGATCCTGAAGATGCCGAGGGGCGGCTGGCTGAGGCCCGGGCCTCCACGTCTTCCCCCAAACCT
CTGGTCCCCCGGCCTGGGCCAGCACCTCCCCGCCTATCCCTGGACACTTTGTTCAGCCCCATCACCCAAC
AGCTGCGCTACCTACTGAAGAAGGCAGATGATTTCCAGAGCTACTTGCTCTACAGCAGAGACCAAGTACA
GAAGGAGCAGCTGGCCAAGGCCATGCCCACCTTCTTACAGATGTGTGAGCCCTACTTCCTGTACCTGGAG
GCAGCCGCGAGAAGCATACCCCCCATCTATGGACCCCTGCAGGAGCTGGTCCGAAAGGGGCTGTTAGAGA
TCTCCCAACAGCTGACCCTGCGCCTGGAACAGCTGGTCCTCATGTACGCTTCCTTTGGGTTCGTGGACCT
GGAGGAGATGAACCCCCTTAGCATCTCCTGTTTCTTTTGCGGGAGGTTCTCCATCAGCCTGTCCCATGAG
GTCTCCATCTTCAGATACTGTGCCCCAACCGCCTACACTGCCAGCCGCTTCCCCCGCTACCTCTATAAGA
AGATGCGCTGGCACCTGGAAGCCACCCCAGAGGCCCCTGGTCGGGGACAAGATTCCCTTGTGGATTACTA
CTTTCTGTGCTATCGAGATACTTGGGAAGACACAGGCCAGAGTCCAGCCAATTCGTGCCCACAGATCCAG
AAGCTGTGGTCCATCGGCCGATGGGTGCCCCTAGGACCAGCCGAGGATGACCTTTATTCATGGATTTTGT
GCCCGCAGCCGCTTGGGGACTACCAGCAGCTGCTGACCATCGGCTTCGAGGAGCCCACGCCCACGCTGGC
CACCGACCTGCTGGTGCAGATCCTCACGGGCCAGGCAGGCCAGGCCCGGCCTCCGAGCGCAGCCGGGCCT
GCGGGGTGGGCAGCGCAGGGGTCTTGA

Translation (358 aa):
MATEQWFEGSLPLDPGETPPPDALEPGTPPCGDPSRSTPPGRPGNPSEPDPEDAEGRLAEARASTSSPKP
LVPRPGPAPPRLSLDTLFSPITQQLRYLLKKADDFQSYLLYSRDQVQKEQLAKAMPTFLQMCEPYFLYLE
AAARSIPPIYGPLQELVRKGLLEISQQLTLRLEQLVLMYASFGFVDLEEMNPLSISCFFCGRFSISLSHE
VSIFRYCAPTAYTASRFPRYLYKKMRWHLEATPEAPGRGQDSLVDYYFLCYRDTWEDTGQSPANSCPQIQ
KLWSIGRWVPLGPAEDDLYSWILCPQPLGDYQQLLTIGFEEPTPTLATDLLVQILTGQAGQARPPSAAGP
AGWAAQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH