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Report for CCDS35169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35169.1 Public Homo sapiens 9 STKLD1 24 110 108 CCDS HistoryNCBI Gene:169436Re-query CCDS DB by CCDS ID:35169.1Re-query CCDS DB by GeneID:169436See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371957.4 ENSP00000361025.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371957.4Link to Ensembl Protein Viewer:ENSP00000361025.3Re-query CCDS DB by Nucleotide ID:ENST00000371957Re-query CCDS DB by Protein ID:ENSP00000361025
Original member Current member NCBI NM_153710.5 NP_714921.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153710.5Link to Protein Sequence:NP_714921.4Re-query CCDS DB by Nucleotide ID:NM_153710Re-query CCDS DB by Protein ID:NP_714921Link to BLAST:NP_714921.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714921.4 680 Q8NE28-1 680 100% 0 0

Chromosomal Locations for CCDS 35169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133376474 133376560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133379036 133379122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133383856 133383900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133385617 133385691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133387447 133387548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133389526 133389596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133390681 133390796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133394291 133394409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133395600 133395763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133397164 133397294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133397972 133398055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133400413 133400529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133401738 133401878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133402878 133403012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133403700 133403828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133403920 133404048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133404789 133404929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133405252 133405421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGCTTGGGCCAGGGTCCAATCGCAGGCGCCCCACGCAGGGGGAGCGAGGCCCAGGGTCCCCCGGAGAGC
CCATGGAGAAGTACCAGGTTTTGTACCAGCTGAATCCTGGGGCCTTGGGGGTGAACCTGGTGGTGGAGGA
AATGGAAACCAAAGTCAAGCATGTGATAAAGCAGGTGGAATGCATGGATGACCATTACGCCAGTCAGGCC
CTGGAGGAGCTGATGCCACTGCTGAAGCTGCGGCACGCCCACATCTCTGTGTACCAGGAGCTGTTCATCA
CGTGGAATGGGGAGATCTCTTCTCTGTACCTCTGCCTGGTGATGGAGTTCAATGAGCTCAGCTTCCAGGA
GGTCATTGAGGATAAGAGGAAGGCAAAGAAAATCATTGACTCTGAGTGGATGCAGAATGTGCTGGGCCAG
GTGCTGGACGCGCTGGAATACCTGCACCATTTGGACATCATCCACAGGAATCTCAAACCCTCCAACATCA
TCCTCATCAGCAGTGACCACTGCAAACTGCAGGACCTGAGTTCCAATGTGCTAATGACAGACAAAGCCAA
ATGGAATATTCGTGCGGAGGAAGACCCCTTTCGTAAGTCCTGGATGGCCCCTGAAGCCCTCAACTTCTCC
TTCAGCCAGAAATCAGACATCTGGTCCCTGGGCTGCATCATTCTGGACATGACCAGCTGCTCCTTCATGG
ATGGCACAGAAGCCATGCATCTGCGGAAGTCCCTCCGCCAGAGCCCAGGCAGCCTGAAGGCCGTCCTGAA
GACAATGGAGGAGAAGCAGATCCCGGATGTGGAAACCTTCAGGAATCTTCTGCCCTTGATGCTCCAGATC
GACCCCTCGGATCGAATAACGATAAAGGACGTGGTGCACATCACCTTCTTGAGAGGCTCCTTCAAGTCCT
CGTGCGTCTCTCTGACCCTGCACCGGCAGATGGTGCCTGCGTCCATCACCGACATGCTGTTAGAAGGCAA
CGTGGCCAGCATTTTAGAGGTCATGCAGAAATTCTCTGGCTGGCCCGAAGTCCAGCTCAGGGCCATGAAG
AGGCTTCTGAAAATGCCTGCAGATCAGCTAGGTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCA
CGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCT
GGGCCAAGCGCTGGTGCACCACCCGGAAGCCAAGGCTCCCTGCAACCAAGCCATCACCTCCACCCTGCTG
AGTGCTCTTCAGAGCCACCCCGAGGAGGAGCCACTTCTTGTCATGGTCTACAGCCTGCTAGCCATCACCA
CAACCCAGGAGTCAGAGTCACTGTCAGAGGAGCTGCAGAATGCTGGGCTGCTGGAGCACATCCTGGAGCA
CCTCAACAGCTCCCTCGAAAGCAGGGACGTCTGCGCCAGCGGCCTGGGCCTGCTCTGGGCCCTCCTGCTG
GACGGTATCATTGTGAACAAGGCCCCCTTGGAGAAGGTCCCGGACCTCATCAGCCAGGTGTTGGCCACCT
ACCCTGCGGATGGGGAAATGGCAGAAGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGGGCTGCAT
CAAGGAGCAGCAGTTTGAACAAGTGGTGGCGCTGCTCCTGCAAAGCATCCGGCTGTGCCAGGACAGAGCC
CTGCTGGTGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAAGGTGTCAGAGCTGGCGGCCTTCAAGG
TGGTGGTGCAGGAGGAGGGCGGCAGTGGCCTCAGCCTCATCAAGGAGACCTACCAGCTCCACAGGGACGA
CCCGGAGGTGGTGGAGAACGTGGGCATGCTGCTGGTCCACCTGGCTTCCTATGAGGAGATCCTGCCGGAG
CTGGTGTCCAGTAGTATGAAGGCCCTGCTCCAGGAGATCAAGGAGCGCTTCACCTCCAGCCTGGTGAGTG
ACAGCAGCGCCTTCAGCAAACCAGGCCTCCCTCCAGGTGGAAGCCCCCAGCTGGGGTGCACCACGTCTGG
GGGACTGGAATAG

Translation (680 aa):
MLGPGSNRRRPTQGERGPGSPGEPMEKYQVLYQLNPGALGVNLVVEEMETKVKHVIKQVECMDDHYASQA
LEELMPLLKLRHAHISVYQELFITWNGEISSLYLCLVMEFNELSFQEVIEDKRKAKKIIDSEWMQNVLGQ
VLDALEYLHHLDIIHRNLKPSNIILISSDHCKLQDLSSNVLMTDKAKWNIRAEEDPFRKSWMAPEALNFS
FSQKSDIWSLGCIILDMTSCSFMDGTEAMHLRKSLRQSPGSLKAVLKTMEEKQIPDVETFRNLLPLMLQI
DPSDRITIKDVVHITFLRGSFKSSCVSLTLHRQMVPASITDMLLEGNVASILEVMQKFSGWPEVQLRAMK
RLLKMPADQLGLPWPPELVEVVVTTMELHDRVLDVQLCACSLLLHLLGQALVHHPEAKAPCNQAITSTLL
SALQSHPEEEPLLVMVYSLLAITTTQESESLSEELQNAGLLEHILEHLNSSLESRDVCASGLGLLWALLL
DGIIVNKAPLEKVPDLISQVLATYPADGEMAEASCGVFWLLSLLGCIKEQQFEQVVALLLQSIRLCQDRA
LLVNNAYRGLASLVKVSELAAFKVVVQEEGGSGLSLIKETYQLHRDDPEVVENVGMLLVHLASYEEILPE
LVSSSMKALLQEIKERFTSSLVSDSSAFSKPGLPPGGSPQLGCTTSGGLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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