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Report for CCDS420.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
420.2 Public Homo sapiens 1 DNALI1 24 110 108 CCDS HistoryNCBI Gene:7802Re-query CCDS DB by CCDS ID:420.2Re-query CCDS DB by GeneID:7802See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 420.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000652629.1 ENSP00000498620.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652629.1Link to Ensembl Protein Viewer:ENSP00000498620.1Re-query CCDS DB by Nucleotide ID:ENST00000652629Re-query CCDS DB by Protein ID:ENSP00000498620
Original member Current member NCBI NM_003462.5 NP_003453.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003462.5Link to Protein Sequence:NP_003453.3Re-query CCDS DB by Nucleotide ID:NM_003462Re-query CCDS DB by Protein ID:NP_003453Link to BLAST:NP_003453.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003453.3 258 O14645-1 258 100% 0 0

Chromosomal Locations for CCDS 420.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37556995 37557075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37557603 37557748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37559327 37559496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37561557 37561735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37562081 37562245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37565026 37565061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGATTCCGCCCGCAGACTCTTTGCTCAAGTACGACACCCCAGTGCTGGTGAGCCGGAACACGGAGAAAC
GGAGCCCCAAGGCTCGGCTACTGAAAGTCAGCCCCCAGCAGCCTGGACCTTCAGGTTCAGCCCCACAGCC
ACCCAAGACCAAGCTCCCCTCAACTCCCTGTGTCCCAGATCCTACAAAGCAGGCAGAAGAAATCTTGAAT
GCCATACTACCCCCAAGGGAGTGGGTGGAAGACACGCAGCTATGGATCCAGCAGGTGTCCAGCACCCCTA
GCACCAGGATGGACGTGGTGCACCTCCAGGAGCAGTTAGACTTAAAGCTGCAGCAGCGGCAGGCCAGGGA
AACAGGCATCTGCCCTGTCCGCAGGGAACTCTACTCACAGTGTTTTGATGAGTTGATCCGGGAGGTCACC
ATCAACTGTGCGGAGAGGGGGCTGCTGCTGCTGCGAGTCCGGGACGAGATCCGCATGACCATCGCTGCCT
ACCAGACCCTGTACGAGAGCAGCGTGGCGTTTGGCATGAGGAAGGCACTGCAGGCTGAGCAGGGGAAGTC
AGACATGGAGAGGAAAATCGCAGAATTGGAGACGGAAAAGAGAGACCTGGAGAGGCAAGTGAACGAGCAG
AAGGCAAAATGTGAAGCCACTGAGAAGCGGGAGAGCGAGAGGCGGCAGGTGGAGGAGAAGAAGCACAATG
AGGAGATTCAGTTCCTGAAGCGAACAAATCAGCAGCTGAAGGCCCAACTGGAAGGCATTATTGCACCAAA
GAAGTGA

Translation (258 aa):
MIPPADSLLKYDTPVLVSRNTEKRSPKARLLKVSPQQPGPSGSAPQPPKTKLPSTPCVPDPTKQAEEILN
AILPPREWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVT
INCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKSDMERKIAELETEKRDLERQVNEQ
KAKCEATEKRESERRQVEEKKHNEEIQFLKRTNQQLKAQLEGIIAPKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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