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Report for CCDS54163.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54163.2 Public Homo sapiens 17 FADS6 24 110 108 CCDS HistoryNCBI Gene:283985Re-query CCDS DB by CCDS ID:54163.2Re-query CCDS DB by GeneID:283985See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 54163.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data, and by the number of 5' repeat motifs that are present in the GRCh38 reference genome assembly allele.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 54163.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612771.5 ENSP00000481684.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612771.5Link to Ensembl Protein Viewer:ENSP00000481684.1Re-query CCDS DB by Nucleotide ID:ENST00000612771Re-query CCDS DB by Protein ID:ENSP00000481684
Original member Current member NCBI NM_178128.6 NP_835229.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178128.6Link to Protein Sequence:NP_835229.3Re-query CCDS DB by Nucleotide ID:NM_178128Re-query CCDS DB by Protein ID:NP_835229Link to BLAST:NP_835229.3

Chromosomal Locations for CCDS 54163.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74878331 74878477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74879404 74879583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74881068 74881255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74882530 74882710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74892523 74892689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74893352 74893595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGAACCCACGGAGCCGATGGAACCTACGGAGCCCATGGAACCTACGGAGCCCATGGAACCTACGGAGC
CCATGGAACCTACGGAGCCCATGGAACCGGCGCGGAGCGCGCACCGTGGGGGCGAGGCGCTGCTGCGGGA
GCTGGAGGTGCTGGTGCAGGACGTGGTGAGGACGAGCTCCTGGTGGGAGCGCCACGGCGTGGACTGCGCC
ATCCTCGCGCTCAGCCTCTTCGCCTTGCCGGCAGGCTTCCTGTGCCTGCGCTGGGAGAATGCCCTGGTCT
TTGCATCCGGCATCACCATCTTGGGTGTGTGCCACTACACACTCACTGTCAAGGGCAGCCACCTGGCCAC
TCATGGGGCCCTCACCGAGTCCAAACGCTGGAGCAAGATCTGGCTGCTTTTCTTTGTGGAGGTGTGCACA
GCCTTCACTGCAGAGCACGCCACGCATGGGCACGTCAAGATGCACCATGCCTACACCAACGTGGTGGGCC
TGGGGGACTCCAGCACGTGGAGGCTGCCTTGCCTCAACCGCTATGTCTACATGTTCCTTGCTCCTTTCCT
CCTCCCCATCGCCACTCCACTGGTGGCTGTCGAGCGGCTGAGGAAGGTGGAGCTCGGGACAGCCCTGCGG
ACGCTGGCCCTGATTTCTCTGGGCCTTTATTCTCACTACTGGCTGCTCCTGAACGTGTCAGGCTTCAAGA
ACCCCAGCTCAGCCCTGGGCTGCATGTTCCTCACCAGATCCCTGTTGGCCCACCCCTACCTCCACGTCAA
CATCTTCCAGCACATCGGACTGCCCATGTTCTCCCGGGACAACAAGCCCCGTCGGATTCACATGATGAGC
CTGGGGGTGCTTAACCTGGCCCGGCTGCCCGTGCTGGACTGGGCGTTCGGCCACTCGATCATCAGCTGCC
ATGTGGAACACCATCTATTCCCCAGGCTCTCTGATAACATGTGCCTGAAGGTGAAGCCCGTGGTGTCCCA
GTTCCTACGTGAGAAGCAGCTACCGTACAACGAGGACTCATACCTGGCTCGCTTCCAGCTGTTTCTCCGT
CGCTATGAGGAATTCATGGTGCAGGCCCCACCCATCACTGAGCTTGTGGGGCTGTAA

Translation (368 aa):
MEPTEPMEPTEPMEPTEPMEPTEPMEPTEPMEPARSAHRGGEALLRELEVLVQDVVRTSSWWERHGVDCA
ILALSLFALPAGFLCLRWENALVFASGITILGVCHYTLTVKGSHLATHGALTESKRWSKIWLLFFVEVCT
AFTAEHATHGHVKMHHAYTNVVGLGDSSTWRLPCLNRYVYMFLAPFLLPIATPLVAVERLRKVELGTALR
TLALISLGLYSHYWLLLNVSGFKNPSSALGCMFLTRSLLAHPYLHVNIFQHIGLPMFSRDNKPRRIHMMS
LGVLNLARLPVLDWAFGHSIISCHVEHHLFPRLSDNMCLKVKPVVSQFLREKQLPYNEDSYLARFQLFLR
RYEEFMVQAPPITELVGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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