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Report for CCDS31612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31612.1 Public Homo sapiens 11 SF3B2 24 110 108 CCDS HistoryNCBI Gene:10992Re-query CCDS DB by CCDS ID:31612.1Re-query CCDS DB by GeneID:10992See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31612.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322535.11 ENSP00000318861.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322535.11Link to Ensembl Protein Viewer:ENSP00000318861.6Re-query CCDS DB by Nucleotide ID:ENST00000322535Re-query CCDS DB by Protein ID:ENSP00000318861
Original member Current member NCBI NM_006842.3 NP_006833.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006842.3Link to Protein Sequence:NP_006833.2Re-query CCDS DB by Nucleotide ID:NM_006842Re-query CCDS DB by Protein ID:NP_006833Link to BLAST:NP_006833.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006833.2 895 Q13435 895 100% 0 0

Chromosomal Locations for CCDS 31612.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66052385 66052517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66052673 66052719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66053027 66053104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66055076 66055315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66055535 66055585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66056838 66056955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66057266 66057375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66058054 66058150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66058314 66058405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66058830 66059045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66059201 66059338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66059515 66059595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66059782 66060009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66060582 66060731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66061686 66061775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66061891 66061998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66063009 66063116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66063400 66063542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66063628 66063729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66067946 66068045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66068148 66068333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66068674 66068745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2688 nt):
ATGGCGACGGAGCATCCCGAGCCTCCCAAAGCAGAATTGCAGCTGCCGCCGCCGCCACCTCCAGGCCACT
ATGGCGCCTGGGCTGCCCAGGAGCTTCAGGCCAAGTTGGCAGAGATCGGAGCTCCGATCCAGGGTAATCG
CGAGGAGCTGGTGGAGCGGCTGCAGAGCTACACCCGCCAGACTGGCATCGTGCTGAATCGGCCGGTTTTG
AGAGGGGAAGATGGGGACAAAGCCGCTCCACCTCCCATGTCGGCACAGCTCCCTGGAATTCCCATGCCAC
CACCACCTTTGGGACTCCCCCCTCTGCAGCCTCCTCCGCCACCCCCACCACCTCCACCAGGCCTTGGCCT
TGGCTTTCCTATGGCCCACCCACCAAATTTGGGGCCCCCGCCTCCTCTCCGTGTGGGTGAGCCAGTGGCA
CTGTCAGAGGAGGAGCGGCTGAAGTTGGCTCAGCAGCAGGCGGCATTGCTGATGCAGCAGGAGGAGCGTG
CCAAGCAGCAGGGAGATCATTCGCTGAAGGAACATGAGCTCTTGGAGCAGCAGAAGCGGGCAGCTGTGTT
ACTGGAGCAGGAACGACAGCAGGAGATTGCCAAGATGGGCACCCCAGTCCCTCGGCCCCCACAAGACATG
GGCCAGATTGGTGTGCGCACTCCTCTGGGTCCTCGAGTAGCTGCTCCAGTGGGCCCAGTGGGCCCCACTC
CTACAGTTTTGCCCATGGGAGCCCCTGTTCCCCGGCCTCGTGGTCCCCCACCGCCCCCTGGAGATGAGAA
CAGAGAGATGGATGACCCCTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAGAAGATCCTGCAGCTGAAG
GAGAGCCGCCAGGAAGAGATGAATTCTCAGCAGGAGGAAGAGGAAATGGAAACAGATGCTCGCTCGTCCC
TGGGCCAGTCAGCGTCAGAGACTGAGGAGGACACAGTGTCCGTATCTAAAAAGGAGAAAAACCGGAAGCG
TAGGAACCGAAAGAAGAAGAAAAAGCCCCAGCGGGTGCGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGG
GAGAAAGACTCAACCCGGTCCCGTGGCTCTGATTCCCCAGCAGCTGATGTTGAGATTGAGTATGTGACTG
AAGAACCTGAAATTTACGAGCCCAACTTTATCTTCTTTAAGAGGATCTTTGAGGCTTTTAAGCTCACTGA
TGATGTGAAGAAGGAGAAAGAGAAGGAGCCAGAGAAACTTGACAAACTGGAGAACTCTGCAGCCCCCAAG
AAGAAGGGATTTGAAGAGGAGCACAAGGACAGTGATGATGACAGCAGTGATGACGAGCAGGAAAAGAAGC
CAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAACCGCTTCACTGTGGCTGAACTCAAGCA
GCTGGTGGCTCGGCCCGATGTCGTGGAGATGCACGATGTGACAGCGCAGGACCCTAAGCTCTTGGTTCAC
CTCAAGGCCACTCGGAACTCTGTGCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAATACCTGCAGGGCA
AACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACTTCATCAAACGCACAGGCATCCAGGAGATGCG
AGAGGCCCTGCAGGAGAAGGAAGAACAGAAGACCATGAAGTCAAAAATGCGAGAGAAAGTTCGGCCTAAG
ATGGGCAAAATTGACATCGACTACCAGAAACTGCATGATGCCTTCTTCAAGTGGCAGACCAAGCCAAAGC
TGACCATCCATGGGGACCTGTACTATGAGGGGAAGGAGTTCGAGACACGACTGAAGGAGAAGAAGCCAGG
AGATCTGTCTGATGAGCTAAGGATTTCCTTGGGGATGCCAGTAGGACCAAATGCCCACAAGGTCCCTCCC
CCATGGCTGATTGCCATGCAGCGATATGGACCACCCCCATCGTATCCCAACCTGAAAATCCCTGGGCTGA
ACTCGCCCATCCCTGAGAGCTGTTCCTTTGGGTACCATGCTGGTGGCTGGGGCAAACCTCCAGTGGATGA
GACTGGGAAACCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAATTTCAGACCAAGACTGAGGAA
GAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAAGAGGAAG
AGGAAGAAAGTGATGAAGACAAACCAGATGAGACAGGCTTTATTACCCCTGCAGACAGTGGCCTTATCAC
TCCTGGAGGCTTTTCATCAGTGCCTGCTGGAATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAG
ATTGAGGAGGCGATGGACGGAAGTGAGACACCTCAGCTCTTCACTGTGTTGCCAGAGAAGAGAACAGCCA
CTGTTGGAGGGGCCATGATGGGATCAACCCACATTTATGACATGTCCACGGTTATGAGCCGGAAGGGCCC
GGCTCCTGAGCTGCAAGGTGTGGAAGTGGCGCTGGCGCCTGAAGAGTTGGAGCTGGATCCTATGGCCATG
ACCCAGAAGTATGAGGAGCATGTGCGGGAGCAGCAGGCTCAAGTAGAGAAGGAGGACTTCAGTGACATGG
TGGCTGAGCACGCTGCCAAACAGAAGCAAAAAAAACGGAAAGCTCAGCCCCAGGACAGCCGTGGGGGCAG
CAAGAAATATAAGGAGTTCAAGTTTTAG

Translation (895 aa):
MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQTGIVLNRPVL
RGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPPLRVGEPVA
LSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQQKRAAVLLEQERQQEIAKMGTPVPRPPQDM
GQIGVRTPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLK
ESRQEEMNSQQEEEEMETDARSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDR
EKDSTRSRGSDSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVH
LKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPK
MGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPP
PWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEE
EEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKK
IEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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