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Report for CCDS13140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13140.1 Public Homo sapiens 20 SLC24A3 24 110 108 CCDS HistoryNCBI Gene:57419Re-query CCDS DB by CCDS ID:13140.1Re-query CCDS DB by GeneID:57419See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328041.11 ENSP00000333519.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328041.11Link to Ensembl Protein Viewer:ENSP00000333519.5Re-query CCDS DB by Nucleotide ID:ENST00000328041Re-query CCDS DB by Protein ID:ENSP00000333519
Original member Current member NCBI NM_020689.4 NP_065740.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020689.4Link to Protein Sequence:NP_065740.2Re-query CCDS DB by Nucleotide ID:NM_020689Re-query CCDS DB by Protein ID:NP_065740Link to BLAST:NP_065740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065740.2 644 Q9HC58 644 100% 0 0

Chromosomal Locations for CCDS 13140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 19212843 19212984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19280959 19281087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19515488 19515564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19580000 19580074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19584971 19585055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19585441 19585544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19654062 19654136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19665864 19665889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19673601 19673654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19681858 19681991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19684176 19684336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19685100 19685361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19693259 19693425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19696797 19696911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19698568 19698680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19717528 19717593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 19720991 19721140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGCGGCCGTCCGGCGACGAGGACCGCGCGCGTCGCCGCCGCCGCCGCCGCCGCCGGAGGGACCTTCTGC
TGAGCCAGCTCTGCTTCCTGGCCTCGGTGGCGCTGCTGCTCTGGTCGCTGTCGAGCCTGCGAGAGCAGAA
GGAGCTTGACCTCATGGACCTCGTAGGGGAAGACAGAAAGTGGATGATGGCGAGGAAGCTGATGCAGGTG
AACGACACTCTGACTTCCGAAGATGCCGGACTCCGGAACAGCAAGAACTGCACCGAACCAGCCCTGCATG
AATTCCCCAATGACATCTTCACAAACGAGGATAGAAGACAAGGTGCGGTGGTCCTCCATGTGCTCTGTGC
CATATACATGTTCTATGCGCTGGCCATTGTGTGTGATGACTTCTTCGTCCCTTCCTTGGAAAAGATCTGT
GAGCGCCTGCACCTCAGTGAAGATGTGGCTGGGGCCACATTCATGGCAGCGGGAAGTTCGGCCCCAGAGC
TGTTCACATCGGTCATAGGGGTCTTCATCACCAAAGGCGATGTGGGAGTTGGCACCATCGTGGGCTCAGC
GGTATTCAACATCCTGTGCATCATTGGTGTCTGTGGGCTCTTTGCTGGGCAGGTTGTGGCTCTTTCCTCC
TGGTGCCTGCTGAGGGATTCTATTTACTACACGCTGTCTGTGATCGCGCTCATCGTGTTTATTTATGATG
AAAAAGTTTCCTGGTGGGAGTCTTTAGTCCTTGTGCTGATGTATCTTATCTACATTGTCATCATGAAATA
TAACGCTTGCATACATCAGTGCTTTGAGAGGAGGACAAAAGGTGCCGGGAACATGGTCAACGGATTGGCC
AACAATGCTGAAATTGATGACAGCAGCAACTGCGACGCAACTGTGGTGCTACTTAAGAAAGCAAATTTCC
ACCGCAAAGCATCAGTGATCATGGTAGACGAGCTGCTGTCAGCCTACCCACACCAGCTTTCCTTCTCTGA
GGCTGGCCTTCGAATCATGATAACCAGCCACTTTCCCCCCAAGACCCGGCTCTCCATGGCCAGTCGCATG
TTGATCAATGAGAGACAAAGATTGATAAACAGCAGGGCTTATACCAACGGGGAATCTGAGGTGGCCATCA
AAATCCCAATTAAGCACACCGTGGAGAATGGGACAGGGCCCAGCAGTGCCCCAGACAGGGGCGTGAATGG
GACACGGAGGGACGATGTTGTGGCTGAGGCTGGCAACGAAACAGAGAATGAAAATGAGGACAATGAGAAT
GATGAGGAGGAAGAGGAGGACGAGGATGATGATGAAGGACCGTACACACCATTCGACACCCCCTCGGGTA
AACTGGAAACAGTGAAATGGGCGTTCACCTGGCCGCTGAGTTTCGTCTTATACTTCACTGTACCCAACTG
CAACAAGCCGCGCTGGGAGAAATGGTTCATGGTGACGTTTGCTTCCTCCACGCTGTGGATCGCAGCCTTC
TCCTACATGATGGTGTGGATGGTCACAATCATTGGTTACACCCTGGGGATTCCTGACGTCATCATGGGGA
TCACCTTCCTGGCTGCTGGGACCAGCGTGCCTGACTGCATGGCCAGCCTCATTGTGGCCAGACAAGGGAT
GGGGGACATGGCTGTGTCCAACTCCATTGGGAGCAACGTGTTTGACATCCTGATTGGCCTCGGTCTCCCC
TGGGCTCTGCAGACCCTGGCTGTGGATTACGGATCCTACATCCGGCTGAATAGCAGGGGGCTGATCTACT
CCGTAGGCTTGCTCCTGGCCTCTGTTTTTGTCACGGTGTTCGGCGTCCACCTGAACAAGTGGCAGCTGGA
CAAGAAGCTGGGCTGTGGGTGCCTCCTCCTGTATGGTGTGTTCCTGTGCTTCTCCATCATGACTGAGTTC
AACGTGTTCACCTTTGTGAACCTGCCCATGTGCGGGGACCACTGA

Translation (644 aa):
MRPSGDEDRARRRRRRRRRRDLLLSQLCFLASVALLLWSLSSLREQKELDLMDLVGEDRKWMMARKLMQV
NDTLTSEDAGLRNSKNCTEPALHEFPNDIFTNEDRRQGAVVLHVLCAIYMFYALAIVCDDFFVPSLEKIC
ERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSS
WCLLRDSIYYTLSVIALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYNACIHQCFERRTKGAGNMVNGLA
NNAEIDDSSNCDATVVLLKKANFHRKASVIMVDELLSAYPHQLSFSEAGLRIMITSHFPPKTRLSMASRM
LINERQRLINSRAYTNGESEVAIKIPIKHTVENGTGPSSAPDRGVNGTRRDDVVAEAGNETENENEDNEN
DEEEEEDEDDDEGPYTPFDTPSGKLETVKWAFTWPLSFVLYFTVPNCNKPRWEKWFMVTFASSTLWIAAF
SYMMVWMVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNVFDILIGLGLP
WALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGVHLNKWQLDKKLGCGCLLLYGVFLCFSIMTEF
NVFTFVNLPMCGDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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