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Report for CCDS17022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17022.1 Public Mus musculus 2 Kcns1 23 108 98 CCDS HistoryNCBI Gene:16538Re-query CCDS DB by CCDS ID:17022.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045196.3 ENSMUSP00000038901.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045196.3Link to Ensembl Protein Viewer:ENSMUSP00000038901.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000045196Re-query CCDS DB by Protein ID:ENSMUSP00000038901
Original member Current member NCBI NM_008435.2 NP_032461.2 Accepted alive Link to Nucleotide Sequence:NM_008435.2Link to Protein Sequence:NP_032461.2Re-query CCDS DB by Nucleotide ID:NM_008435Re-query CCDS DB by Protein ID:NP_032461Link to BLAST:NP_032461.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032461.2 497 O35173 497 100% 0 0

Chromosomal Locations for CCDS 17022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164164548 164165015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164167812 164168837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGTGAGCGAGTTTCCGGGTCCAGGCTCTCGGGTCCCCTGGCGGCCTAGAGACGAGGCGCTGCGCGTGA
ACGTGGGCGGAGTGCGGCGGCTGCTGAGCGCGCGCGCCCTTGCGCGCTTCCCGGGCACGCGCCTGGGCCG
CCTACAGGCGGCGGCGTCCGAGGAGCAGGCGCGGCGCCTGTGCGACGACTACGACGCAGCGGCGCACGAG
TTCTACTTTGATCGGCATCCGGGCTTCTTTCTCGGCCTCCTACACTTCTACCGCACCGGGCACCTGCACG
TCCTAGACGAGCTGTGCGTCTTCGCCTTCGGCCAGGAGGCTGACTACTGGGGCCTGGGCGAGAACGCGCT
GGCCACGTGCTGCCGCGCGCGGTATCTGGAGCGGCGTGTGGCGCGGCCTCGCGCCTGGGACGAGGACAGC
GACGCGCCGAGCAGCGTGGACCCGTGTCCCGACGAGATCTCGGACGTGCAGCGGGAGCTGGCGCGCTATG
GTGCGGCTCGCTGTGGCCGCCTGCGCCGTCGTCTCTGGCTCACCATGGAGAATCCAGGCTACTCGCTGCC
CAGCAAGCTCTTCAGCTGCGTATCCATCGGCGTGGTGCTCGCCTCCATCGCTGCCATGTGCATCCACAGC
CTGCCGGAGTACCAAGCTCGGGAGGCGGCGGCGGCGGTGGCTGCAGTGGCCGCGGGTCGCAGCGCAGAGG
AGGTGCGCGACGACCCGGTGCTGCGCCGCCTGGAGTACTTCTGCATCGCTTGGTTCAGCTTCGAGGTGTC
GTCGCGCCTGCTGCTGGCTCCCAGCACGCGCAACTTCTTCTGCCACCCGCTCAACCTCATTGACATCGTG
TCGGTGCTGCCCTTCTATCTCACACTGCTGGCTGGCGCAGCGCTTGGTGACCAGCGCGGAGCCAGCGGGG
AGGAGCTCGGGGACCTGGGCAAGGTAGTGCAAGTGTTCCGCCTCATGCGCATCTTCCGCGTGCTCAAGCT
GGCGCGCCACTCCACGGGGCTGCGTTCGCTGGGCGCCACGCTCAAGCACAGCTACCGTGAGGTGGGCATC
TTACTGCTGTACCTGGCCGTGGGTGTGTCAGTGTTCTCCGGCGTGGCCTACACAGCCGAAGAAGAAAACG
AGGGCTTTCACACAATCCCTGCCTGCTGGTGGTGGGGCACAGTGAGCATGACCACAGTGGGCTATGGGGA
TGTGGTGCCAGAGACTGTGGGTGGCAAGCTGGCGGCCTCGGGCTGCATCCTCGGGGGCATCCTGGTGGTC
GCCCTCCCCATCACCATCATCTTCAACAAGTTTTCCCACTTCTACCGGCGCCAGAAGGCACTGGAGGCGG
CCGTGCGGAGCAGCGGTCAGCGCGAGTTTGAGGACTTGCTGAGTAGCGTTGACGGGGTATCGGATGTGTC
TCTGGAAACATCCCGGGACACTTCTCAGGAGGGACGCTCTACAGACCTGGAGACCCAAGCTCCCCGGGAG
CCTGCAAAATCTCACAGTTATTAA

Translation (497 aa):
MVSEFPGPGSRVPWRPRDEALRVNVGGVRRLLSARALARFPGTRLGRLQAAASEEQARRLCDDYDAAAHE
FYFDRHPGFFLGLLHFYRTGHLHVLDELCVFAFGQEADYWGLGENALATCCRARYLERRVARPRAWDEDS
DAPSSVDPCPDEISDVQRELARYGAARCGRLRRRLWLTMENPGYSLPSKLFSCVSIGVVLASIAAMCIHS
LPEYQAREAAAAVAAVAAGRSAEEVRDDPVLRRLEYFCIAWFSFEVSSRLLLAPSTRNFFCHPLNLIDIV
SVLPFYLTLLAGAALGDQRGASGEELGDLGKVVQVFRLMRIFRVLKLARHSTGLRSLGATLKHSYREVGI
LLLYLAVGVSVFSGVAYTAEEENEGFHTIPACWWWGTVSMTTVGYGDVVPETVGGKLAASGCILGGILVV
ALPITIIFNKFSHFYRRQKALEAAVRSSGQREFEDLLSSVDGVSDVSLETSRDTSQEGRSTDLETQAPRE
PAKSHSY


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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