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Report for CCDS585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
585.1 Public Homo sapiens 1 LRRC42 24 110 108 CCDS HistoryNCBI Gene:115353Re-query CCDS DB by CCDS ID:585.1Re-query CCDS DB by GeneID:115353See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 585.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319223.8 ENSP00000318185.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000319223.8Link to Ensembl Protein Viewer:ENSP00000318185.4Re-query CCDS DB by Nucleotide ID:ENST00000319223Re-query CCDS DB by Protein ID:ENSP00000318185
Original member Current member EBI ENST00000371370.8 ENSP00000360421.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371370.8Link to Ensembl Protein Viewer:ENSP00000360421.3Re-query CCDS DB by Nucleotide ID:ENST00000371370Re-query CCDS DB by Protein ID:ENSP00000360421
Original member Current member NCBI NM_001256409.2 NP_001243338.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256409.2Link to Protein Sequence:NP_001243338.1Re-query CCDS DB by Nucleotide ID:NM_001256409Re-query CCDS DB by Protein ID:NP_001243338Link to BLAST:NP_001243338.1
Original member Current member NCBI NM_052940.5 NP_443172.1 Accepted alive Link to Nucleotide Sequence:NM_052940.5Link to Protein Sequence:NP_443172.1Re-query CCDS DB by Nucleotide ID:NM_052940Re-query CCDS DB by Protein ID:NP_443172Link to BLAST:NP_443172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243338.1 428 Q9Y546 428 100% 0 0
NP_443172.1 428 Q9Y546 428 100% 0 0

Chromosomal Locations for CCDS 585.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53952000 53952472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53958149 53958280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53960356 53960474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53962034 53962122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53962296 53962409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53966296 53966380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53967665 53967939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGTCTTACTACCTCAGCTCAGAAAACCACCTGGACCCAGGGCCCATCTACATGCGAGAAAATGGGCAGC
TGCACATGGTCAATCTGGCTCTGGATGGTGTCAGGAGTAGCCTGCAGAAGCCAAGGCCTTTCAGACTGTT
CCCCAAAGGCTTTTCTGTGGAGCTTTGCATGAACAGGGAAGACGACACTGCACGGAAAGAGAAGACTGAT
CATTTCATCTTCACATACACCCGAGAGGGGAATCTTCGGTACTCCGCCAAATCCCTCTTCAGCCTTGTCC
TGGGTTTCATCTCCGACAATGTGGATCACATTGATTCCCTTATTGGCTTTCCTGAGCAGATTGCTGAAAA
GCTGTTCTCTGCTGCTGAAGCCAGACAGAAATTCACTGAGCCAGGTGCAGGGCTGAGGGCTTTACAGAAA
TTCACTGAGGCCTATGGAAGTTTGGTGCTTTGCTCCCTGTGTTTGCGAAACAGGTATCTCGTGATTTCAG
AAAAGCTTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTGGATCTTTCCTGTTGCAAGCTTGGAGA
TGAGCATGAACTTCTAGAACATCTCACCAATGAAGCCCTGTCTAGTGTAACTCAGCTCCACCTGAAGGAT
AATTGTTTATCTGATGCTGGGGTGCGGAAGATGACAGCACCAGTTCGAGTGATGAAAAGAGGCCTTGAGA
ATCTAACATTATTAGACTTATCATGTAACCCTGAGATCACAGATGCAGGCATTGGATACCTCTTTTCTTT
TAGGAAACTAAACTGCTTAGATATCTCTGGGACAGGGCTCAAGGACATCAAAACCGTCAAGCACAAGCTC
CAGACCCACATAGGCCTTGTTCACTCCAAAGTGCCTTTGAAGGAATTTGATCATAGTAACTGCAAGACAG
AGGGCTGGGCTGACCAGATCGTTCTGCAGTGGGAGCGTGTGACTGCGGAAGCTGTGAAGCCACGGGAGAC
CTCGGAGCCTAGAGCAGCAGCTCAGCGCTTCTATGGGAAGCGGTCTCGAGCAGAAGCCCCACTGAAGTGT
CCCCTGGCAGACACCCACATGAACTCTTCCGAGAAACTCCAGTTCTATAAAGAGAAAGCCCCAGATTGCC
ATGGGCCAGTGTTGAAACACGAAGCTATCTCAAGCCAGGAGTCAAAGAAGAGCAAGAAGAGACCTTTTGA
GGAGTCAGAGACAGAACAGAATAACTCTTCACAACCTTCAAAGCAGAAATATGTATGTCTTGCTGTGGAA
GACTGGGACTTGTTAAATTCCTATTGA

Translation (428 aa):
MSYYLSSENHLDPGPIYMRENGQLHMVNLALDGVRSSLQKPRPFRLFPKGFSVELCMNREDDTARKEKTD
HFIFTYTREGNLRYSAKSLFSLVLGFISDNVDHIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQK
FTEAYGSLVLCSLCLRNRYLVISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEALSSVTQLHLKD
NCLSDAGVRKMTAPVRVMKRGLENLTLLDLSCNPEITDAGIGYLFSFRKLNCLDISGTGLKDIKTVKHKL
QTHIGLVHSKVPLKEFDHSNCKTEGWADQIVLQWERVTAEAVKPRETSEPRAAAQRFYGKRSRAEAPLKC
PLADTHMNSSEKLQFYKEKAPDCHGPVLKHEAISSQESKKSKKRPFEESETEQNNSSQPSKQKYVCLAVE
DWDLLNSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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