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Report for CCDS17730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17730.1 Public Mus musculus 3 Kcna3 23 108 98 CCDS HistoryNCBI Gene:16491Re-query CCDS DB by CCDS ID:17730.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052718.4 ENSMUSP00000050680.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052718.4Link to Ensembl Protein Viewer:ENSMUSP00000050680.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000052718Re-query CCDS DB by Protein ID:ENSMUSP00000050680
Original member NCBI NM_008418.2 NP_032444.2 Updated not alive Link to Nucleotide Sequence:NM_008418.2Link to Protein Sequence:NP_032444.2Re-query CCDS DB by Nucleotide ID:NM_008418Re-query CCDS DB by Protein ID:NP_032444
Current member NCBI NM_008418.3 NP_032444.2 Accepted alive Link to Nucleotide Sequence:NM_008418.3Link to Protein Sequence:NP_032444.2Re-query CCDS DB by Nucleotide ID:NM_008418Re-query CCDS DB by Protein ID:NP_032444Link to BLAST:NP_032444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032444.2 528 P16390 528 100% 0 0

Chromosomal Locations for CCDS 17730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107036423 107038009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGACCGTGGTGCCCGGGGACCACCTGCTGGAGCCAGAGGCGGCGGGAGGCGGTGGCGGGGACCCGCCTC
AGGGAGGCTGTGGCAGTGGCGGCGGCGGTGGCGGCTGCGACCGCTACGAGCCACTGCCACCCGCGCTGCC
CGCCGCGGGCGAGCAAGATTGCTGCGGCGAGCGTGTGGTCATCAACATCTCTGGGCTGCGCTTCGAGACG
CAGCTCAAGACCCTCTGCCAGTTCCCCGAGACACTGCTGGGCGACCCCAAGCGGCGCATGCGGTACTTTG
ACCCACTCCGCAATGAGTACTTCTTCGACCGCAACCGACCCAGCTTCGACGCCATCCTCTACTACTACCA
GTCCGGGGGCCGCATTCGCCGGCCGGTCAACGTGCCCATCGACATCTTCTCCGAGGAGATCCGCTTTTAC
CAGCTGGGTGAGGAGGCCATGGAAAAGTTCCGTGAGGATGAGGGCTTCCTGCGGGAGGAGGAGCGACCCC
TGCCCCGCCGTGACTTCCAGCGCCAGGTGTGGCTGCTCTTCGAATATCCGGAGAGCTCCGGGCCGGCCCG
GGGCATTGCCATTGTGTCAGTGCTGGTCATTCTCATCTCCATTGTCATCTTCTGCTTGGAGACGCTTCCC
GAGTTTCGCGATGAGAAAGACTATCCCGCCTCCCCGTCGCAGGACGTGTTTGAGGCTGCCAACAACAGCA
CGTCGGGGGCCCCTTCTGGAGCCTCCAGCTTCTCGGACCCCTTCTTCGTGGTGGAGACCTTGTGCATCAT
CTGGTTCTCCTTTGAGCTTCTGGTGCGGTTCTTTGCTTGCCCCAGTAAAGCCACCTTCTCCAGAAATATC
ATGAACTTGATAGACATTGTGGCCATCATTCCTTATTTTATCACTCTGGGCACTGAGCTGGCTGAACGAC
AAGGTAATGGGCAGCAGGCCATGTCGCTGGCCATCCTGAGAGTCATCCGCCTAGTAAGGGTTTTCCGCAT
CTTCAAGCTCTCCCGCCATTCTAAGGGGCTGCAGATCCTAGGACAGACGCTGAAGGCTTCCATGCGGGAG
CTGGGGCTGCTCATATTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGG
CAGACGACCCTTCTTCGGGTTTTAACAGTATCCCGGATGCCTTCTGGTGGGCAGTAGTAACCATGACAAC
TGTTGGTTATGGTGATATGCACCCAGTGACCATAGGAGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCA
GGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAACTACTTCTACCACCGGGAGA
CAGAAGGGGAAGAGCAAGCCCAGTACATGCACGTGGGCAGTTGCCAGCACCTCTCCTCTTCAGCCGAGGA
GCTCCGAAAAGCCCGGAGTAACTCCACTCTGAGTAAGTCGGAGTATATGGTGATCGAAGAGGGGGGTATG
AACCACAGCGCCTTCCCGCAGACCCCCTTCAAAACGGGCAACTCCACAGCCACTTGCACCACGAACAATA
ACCCCAACTCCTGTGTCAACATCAAGAAGATATTCACTGATGTCTAA

Translation (528 aa):
MTVVPGDHLLEPEAAGGGGGDPPQGGCGSGGGGGGCDRYEPLPPALPAAGEQDCCGERVVINISGLRFET
QLKTLCQFPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFY
QLGEEAMEKFREDEGFLREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLP
EFRDEKDYPASPSQDVFEAANNSTSGAPSGASSFSDPFFVVETLCIIWFSFELLVRFFACPSKATFSRNI
MNLIDIVAIIPYFITLGTELAERQGNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRE
LGLLIFFLFIGVILFSSAVYFAEADDPSSGFNSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIA
GVLTIALPVPVIVSNFNYFYHRETEGEEQAQYMHVGSCQHLSSSAEELRKARSNSTLSKSEYMVIEEGGM
NHSAFPQTPFKTGNSTATCTTNNNPNSCVNIKKIFTDV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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